Detail information of BGIOSGA016630_circ_g.1


General Information
CircRNA Name BGIOSGA016630_circ_g.1
ID in PlantcircBase osi_circ_005565
Alias 4:22668370|22669150
Organism Oryza sativa ssp. indica
Position chr4: 22668370-22669150  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016630
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016630_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016630-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCTGAAGGATCGCTGATGCTGAAGAGAATTTGGGTGAGAGTGAAGTGCGTGAAGCCCATCTA
GCCAAATCGTTGTATTTCATAAGGGTTGGAGAGAAGatatggcgtctctgtacgagtcgctggg
ggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggag
gagatccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATGGCGTCTCTGTACGAGTCGCTGGGGGCCGGCGGCGTGCTGGAGACGGACGCTGCGCTGCT
CGCGGAGATGCGCGGCAGGATCGAGGAGGAGATCCGGAAGCTTGACGAGAAGTGAGTAGATCTC
GCTTGCTCACCTTTTCCTGTTCGATTTGAAGTCTAGGTTCTAGGGTTTCATAGAAATCGTGGAG
TTGACGCATCTAATACCGTGACTAGATCGCTACTTTCATACTCGTATCTCTAGTCTGTAATTGT
CCATTGTTCAATGTTAGTGCGCTTAATTTGCTTTAGCACATCTGACCATCAATTGGTTAGTCCT
GTTTTCTGTAACAGAATTATCAATTGAGATTTGTTTTTCTGCATTAAGGGCATGCCGAGTTCTG
CTCATCTGAATTAGAGTAATCTAATCTAGCCATCCAGATTAGAACAAAATGTTTAGTGATGATA
AATATAAATTTGATGATCGCATGGACAAAATAAATGCTGTTGAGGAAGCACTTTAGTTTATGCC
ATCATAAATTTTATCAACACTTGCTGAAAGGCTCACAATTTGTGCTTGTTATGGATAGCTTTCC
GTTCTTCTTCTAGCATACATGAGTTATCATTTTGCTTGAGAGTACTATTCTGAAATATAATCAA
AGTTGTTCAGTTATATTCTTGTTGTTAAAAATCGTCCTTTATCCCTGAAGGATCGCTGATGCTG
AAGAGAATTTGGGTGAGAGTGAAGTGCGTGAAGCCCATCTAGCCAAATCGTTGTATTTCATAAG
GGTTGGAGAGAAG
Conservation Information
Conserved circRNAs osa_circ_024254*
PMCS
Functional Information
Coding potential Y
Potential coding position 22669113-22669133(-)
22669136-22669133(-)
22668373-22669112(+)
Potential amino acid sequence MGFTHFTLTQILFSISDLLVKLPDLLLDPAAHLREQRSVRLQHAAGPQRLVQRRHIFSPTLMKY
NDLARWASRTSLSPKFSSASAIFSSSFRISSSILPRISASSAASVSSTPPAPSDSYRDAISSLQ
PL*(-)
MKYNDLARWASRTSLSPKFSSASAIFSSSFRISSSILPRISASSAASVSSTPPAPSDSYRDAIS
SLQPL*(-)
MASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIR
VGEKIWRLCTSRWGPAACWRRTLRCSRRCAAGSRRRSGSLTRRSLMLKRIWVRVKCVKPI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021