Detail information of AT2G07360_circ_g.17


General Information
CircRNA Name AT2G07360_circ_g.17
ID in PlantcircBase ath_circ_013032
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3055786-3056491  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full
Parent gene AT2G07360
Parent gene annotation SH3 domain-containing protein
Parent gene strand -
Alternative splicing AT2G07360_circ_g.18
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G07360.2:3
AT2G07360.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAGGTATAAAGGCAGAGCATAAGAACACAAACTTAAACCTGATCCAAAGTGGCAGCTAATTC
ATGAATGCTCCTTGCAAGTTGCGAATAGGAAACCGGattcaaattcagaatttgtagcttcgtt
tgtaagttgattcactatccgaggaacaacatcagctcttgtgactcctccaccagcatcaata
tctgctag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 373
Transcript exons: 3055786-3056005,3056244-3056336,3056432-3056491
ATTCAAATTCAGAATTTGTAGCTTCGTTTGTAAGTTGATTCACTATCCGAGGAACAACATCAGC
TCTTGTGACTCCTCCACCAGCATCAATATCTGCTAGAGCATCCCAGTTAGGAGTGGGGATACCA
CCCCCTGGAGTCATGCCCGTATCGGACAAAATTCTAGCTAGGTAATAATAAACATATCGTAGCA
CATTCCTGTCTTCACATTGCTGATTAAGCATAAGAAGAGATGGGGCCAGAGAAGGATCAACTGA
GTTGTACACAGCAAGCTTAGGGAACACGTGATTCACTAGTTGTTTCTGAGAACTTTTCTGATCC
AAAGTGGCAGCTAATTCATGAATGCTCCTTGCAAGTTGCGAATAGGAAACCGG

Genomic sequence ATTCAAATTCAGAATTTGTAGCTTCGTTTGTAAGTTGATTCACTATCCGAGGAACAACATCAGC
TCTTGTGACTCCTCCACCAGCATCAATATCTGCTAGAGCATCCCAGTTAGGAGTGGGGATACCA
CCCCCTGGAGTCATGCCCGTATCGGACAAAATTCTAGCTAGGTAATAATAAACATATCGTAGCA
CATTCCTGTCTTCACATTGCTGATTAAGCTGTATCAATCACAAGAGAAAAAGAATGCTAAAAAC
CTGATGCCTCTCTTTGACGGATATTGTTTTTGAAAATGCGAATTTGTGAAGATCCATGATAATT
TAATGGGTAGAGAAAAAAAAAACTCTAATAGAACAAATCATTTTAGATGCTCCATCATAAAGTT
ATAAAAAACGATACAAGAAACTGTACTTGATCTGACACTATCTGGTCGTCAAATGAGTAACCAG
TGACACATACCATAAGAAGAGATGGGGCCAGAGAAGGATCAACTGAGTTGTACACAGCAAGCTT
AGGGAACACGTGATTCACTAGTTGTTTCTGAGAACTTTTCTGCTCACTCGCGAAAAACAGAAGA
AACAGTCAGATACTATTTTCAGCAGAAGAAGAGAGGTATAAAGGCAGAGCATAAGAACACAAAC
TTAAACCTGATCCAAAGTGGCAGCTAATTCATGAATGCTCCTTGCAAGTTGCGAATAGGAAACC
GG
Conservation Information
Conserved circRNAs NA
PMCS 0.226644562
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017