Detail information of Os12g0178100_circ_ag.3


General Information
CircRNA Name Os12g0178100_circ_ag.3
ID in PlantcircBase osa_circ_010678
Alias Os_ciR398
Organism Oryza sativa
Position chr12: 3956746-3961217  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0178100_circ_ag.1 Os12g0178100_circ_ag.2 Os12g0178100_circ_g.1 Os12g0178100_circ_ag.2 Os12g0178100_circ_ag.3 Os12g0178100_circ_ag.4 Os12g0178100_circ_ag.5 Os12g0178200_circ_g.1
Support reads 81/13
Tissues root/seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGATGAGCAACTTCACTAACCTTGAATGATGAGTCCTCAAAGAGCACAGCATCAGTAGGGAG
AACTAGAAGATCCTCATCTCGGCGTTCTTTGATTTCcttgaagtagctattatcaaacttcagc
cactgtgatgtccaagattgccctccaggtgcaccaggtccgtttttctttgcgagtcaaaaga
aattaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAAGTAGCTATTATCAAACTTCAGCCACTGTGATGTCCAAGATTGCCCTCCAGGTGCACCA
GGTCCGTTTTTCTTTGCGAGTCAAAAGAAATTAATCAATTAGCCAAACAAGAAATTCAACATTC
AGAACATTCATCAGCAAGAACTTCATGAAGGAGTGCATGCTAGATATAGTTAATACTGCAAGTC
TACTACCCACAAGAACATATTTGAAAGCATATAAGCACTGTAGTAGGAAAGTTTGTAGCATTGA
TGCTAATATAGGTCATCCGCGATTAGAGATGAAGCATAATATGGTCAACTAACACAACAGCGCA
GAAGCATCTCTTTATTTTCTTCGGTGAAGTAGTAATAAATCATATAAAGATCTTCAATACAGAG
CTTTTACAAGGAAGAGATATATGCAAGATCAATAAGCATTGCCAGTGATGACAACTTAATTATC
CCATTGGCTAATCTAAAAAATACGTAGTAACTAAATAACATGCAATACTCCAAAATGAATCATG
GACAAGGCGTTACTAAAATCAGAACAATAACCTACTACTGATATAACTATATAAGTTACATACA
GTGTATTTAGTTTCTGGTTTGCCCCATCCACTGCGCTCTGGTCTAGATCGTCCAAGTGTATGAG
CTCCTGACAATGCAACAATTTCCTACAGATCACAAAACAGATGTAACTAGCAAATCCCCAGAAA
AAGTTGTTTGGAATATTGAATGAAGCAATCTGCAAGTACCTTGTCACTCAGGCCCATTCTATAG
AATACTTCTCGTAGATGTTCCGCAGGTGAAGGAGGGCCAGCAGCTGAAAGGGTGGAAATGTAAA
ATATAGGGAACAAAATTGCAACAGAAAGCACATGCATATGAAAGAGGATTAGATCATCATCAGC
ACTAGATTTCAAATATCAAAGTACACTATAAGACACAGCAGGAAATATATCAATGTCATGTGAA
TACAAAAACAAACAGCTGAAAGTGCTGCAATTCTTGGGGAGCTATATTTTATCAATCTCACAGG
TTAAGTGCAATCATAGCACTGATTTTCATTCTGCACAGCATGTGCAGCTTACAATTTTTCTGTT
ATATTGCAATTGGGGTAATCTTTCTTACACATTTGCATGTCCAAAATGTTATTACACCAGATTA
CAGAGCTCACGGTGGCAATATTTCATAAGAAACTTGTTTTTTCATGCTTTTAGCCAGTTAGCAT
CAATTTTAGTACTTCATGAAGTAAAACCCATAGATACATGGATAAGATACCACGCCTAAACCTT
CTAAATAAGTTGAATCTGAGAGGCATTACCACGAATGTAATAGCCTATTATAGGCAGACCATTG
TCCATTTAAGAAAATAAATTTATCATTAAAGAAGAAATAAAACAGGACTATTACAGTAGGTTAG
CAAGAAAACTATCAATTTATATTAATGTCTTCTATTGTTGACACTACATCTAAATAATTTGATT
TTGATGTAAATAGATTGCAGACAAATAAAGATGGATATGCGCGATTTCCTATGTCAATCAGGTA
TCTCAATTGCATGATAACCCATAAATTGAGATTAAACAAGAGGACCAATAGAGTATATTTGTAA
CTTCATTTCTGAGTGTTGGAACACATATCAGTTCTGCTCTGAAAGTTATCAATATTCTAGGTTT
AATGAATAAGGAGAAAGTAGAATTTGCGAAATGAAGCTGCAAGAAGATGGCCAATTGTAATAGC
AACTTGGGATCAGTGTGACATGACACTAAAGGTACAGCATTATATTTTAGTTTCCAGATGATAA
ATCACGGTAACGAACAAATTTGGGCTACAGAACCCAAAAGCTACTGACCAGGAAGTCTCCCCTC
TGGCGGGCATTGTTCAGGGGCAGCAACATCAACCCTTCCATAGATCATGGGGATCTTGGGGCCA
CCGGCTTCCTGAGTTTTAAAACAGACCAAAGCAATCATATCAGCATTAAATAATAAATACTGTT
TGAATGATAGTTCATAGTTATCATTAGACTAAAGTGACAAAAGGACCTCAATGGCTGTAGCACT
GGCGAGCTGAAACAGATCTGCATAAGTGACACCTGCATGCTTGTCTTTGATGGGCTGGATCAGC
TTCAAAGCATTCACAAGACCTGAAGTAGAGGGTTATTGTAAGGATAACCATGAATCACGAACAA
TAGATAATGACAGAACAGAAGCACTACCTGCATTAGCCGCATGTTTTAACTCAATTTCGAATCT
CAAGCTACCATTGGCACCACCACACTTTGGCCATTCAGTAATGTTCTTGTCATAAGTACCAGCA
TCATGCCACCCTAACCGAACCTGCAACCAAGGTTAACCCAGCAGACAAGTCATAAATATGCAAT
GTTCGATCAAGCAGATGCAGAACCATGAACTGCACAAATCTAGCGAATATTGTGCATAGAACGT
GTTACAGTCTTCTTGCACACAGGTGAACTAGAGCAGTTGCATCTTCTCGAAGTAAAAGTTACTG
TTTTAAATAGCATAATCGACCAGTTAACTAAACACACAAAGAACAATCTTTTGTAGAGATGCGA
AATCCATGGATATAGCTAGACAATCTAAAATCCCATTATACTCTTCGAACCATACAAACCCGCA
ATCTTTGCACAAGAACACTAAAGCAGCAAAGCATATATTAGCATACCAGGATGGGATGGCAGGA
GGTGGACTTGAGCAGCTGCTTGACGTCCTCCCGCGCGCCCCGCAGCTCAGCCGCCGCGTCCCCC
GCCGCCGCCGCCGACGAGCTCGCCGGACGCCTCCCGAGCTCCTTCACGGGGGAGAAAATGAACA
AAAATCATCAAGAAAGGGACATCGCTAAATCAAGAACCGGTCCGCCGCCGGCGCGGGTAATGAA
CAGCGAAAGGGAGGGGGGGAGGCGTCGTAGGTGGTACTAGTACCTGAAGAGAGGGGAGGGGAGA
GGCGGCGGAGAGGCCGCGGCGGAGGAGGCGGTGGACGACGGCCATGTCGGCGGCGGCGGAGGTG
GGGAGAGGAGGGTTTTGGTGGCGTTTTGGGAGTGGTTCGCTGCTCCGTGGTCAGGGGAGGAATC
TACCAATAGCAAAATTTCACTCTCTTTTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTGGAATT
CTTTAACTAGTTCGTTTGATTGGGGGGGAGAAGAGTGGAAGACACATACTCCCTCCATCCCAAA
ATTTTCGACACCGTTGACTTTTTTAAAAATATTTAACCATTAATCTTATTTAAAAAAATTAAGT
AATTATTAATTCTTTTCCCGTCATTTGATTTATTGTTAAATATATTTTTATGTATACATATAGT
TTTACACATTTCACAGAAGTTTTTGAATAAGACGAATGGTCAAACATATTTAAAAAAGTCAACG
GCGTCAAGGAGGGAGTATTTAGGTTGAGTTATTTAGGCCTCTTCTTTTTCTTAAGTTCAAACTT
CAATTTTCTCGTTTTTATTAGCACGTTTTTCAAACGGTTAAATGTTACTTTCTTTTAAAAAAAT
AATTATATATATGGAAGTTGTTTAAAAAACAAATAAATCTATTTTTTCAAGTTTATAATAGTTA
ATATTTAATTTTTTTAAGATAATTAATCATATACTAATGAGCTTTCTCATTTCGCGTACAATAC
AAATCTTCCTCCTCCATGAGAAACCGAAGGAACCCGTGCTAGCATGTTGGGTGTCACAACTCAC
AACTCGCAACTATAGTTTGATCTTAATGCTAAATAAGTATGTTAGAAATAATGTAGGAACTCAC
AATTCACATTACTATCTTCGTTATATAAAAACCTAGTATTATCTAACTGAGGTTGTGATGCATC
TAATTGTTGACCTGAACAAATTTGGTTGCTCTTTTTCGAGCTATCTTTATAATATAGTACAATA
GATAAGATGGCAAGCAGTAACACAGCTCAATACACAGCACCAGCATCACATTTACAATAAGTTA
AATTTCTGGATGGGTAGTAAAACCAGAATATGCTCTATAGTAGCAAGAACAAACAAGGTATTAT
CTTGTTTATCACTCGCCAAAATGCAGTTCATCGGCAGCTGACGCCAGCTATTCAAGTGAAATAC
CCTGTGCCATTTCAGCGATAATAAGCAAGTCAAGTTGACTGGACATTTTCTCCATTCCAATAAT
GGAAGTGAGGAAGTCTTTAATCTCATTTACCTTTGGAGGATCAAACTTTGCCCCAAGATTGCTC
AGTTTGGCATGAGCTTCAGCATAGTCTTCGAAAAATGCATCCTGATCCTCAGCATACTTTTCAG
CATGGATCTTCAGGCATGACAAGCAAGCAAAAAAAGAAAAAAATTTAGAGCATCACTTTTGATT
TGCAATTCTTTACAACACTAGCTGATGAGCAACTTCACTAACCTTGAATGATGAGTCCTCAAAG
AGCACAGCATCAGTAGGGAGAACTAGAAGATCCTCATCTCGGCGTTCTTTGATTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.442213886
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017