Detail information of Os12g0178100_circ_ag.2


General Information
CircRNA Name Os12g0178100_circ_ag.2
ID in PlantcircBase osa_circ_010677
Alias NA
Organism Oryza sativa
Position chr12: 3956582-3961040  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os12g0178100_circ_ag.1 Os12g0178100_circ_ag.3 Os12g0178100_circ_g.1 Os12g0178100_circ_ag.2 Os12g0178100_circ_ag.3 Os12g0178100_circ_ag.4 Os12g0178100_circ_ag.5 Os12g0178200_circ_g.1
Support reads 4
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGATCAAACTTTGCCCCAAGATTGCTCAGTTTGGCATGAGCTTCAGCATAGTCTTCGAAAAA
TGCATCCTGATCCTCAGCATACTTTTCAGCATGGATcttgaatgatgagtcctcaaagagcaca
gcatcagtaggcagaactagaaggtcctcatctcggcgttctttgatgtccttaaattttatgc
agactaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAATGATGAGTCCTCAAAGAGCACAGCATCAGTAGGCAGAACTAGAAGGTCCTCATCTCGG
CGTTCTTTGATGTCCTTAAATTTTATGCAGACTAACATAAGTTTTGTAAATTGTAACTGCTATC
ATGTTTGGTATTGATAAAGAAAATAGTGCATCCTACCTTGAAGTAGCTATTATCAAACTTCAGC
CACTGTGATGTCCAAGATTGCCCTCCAGGTGCACCAGGTCCGTTTTTCTTTGCGAGTCAAAAGA
AATTAATCAATTAGCCAAACAAGAAATTCAACATTCAGAACATTCATCAGCAAGAACTTCATGA
AGGAGTGCATGCTAGATATAGTTAATACTGCAAGTCTACTACCCACAAGAACATATTTGAAAGC
ATATAAGCACTGTAGTAGGAAAGTTTGTAGCATTGATGCTAATATAGGTCATCCGCGATTAGAG
ATGAAGCATAATATGGTCAACTAACACAACAGCGCAGAAGCATCTCTTTATTTTCTTCGGTGAA
GTAGTAATAAATCATATAAAGATCTTCAATACAGAGCTTTTACAAGGAAGAGATATATGCAAGA
TCAATAAGCATTGCCAGTGATGACAACTTAATTATCCCATTGGCTAATCTAAAAAATACGTAGT
AACTAAATAACATGCAATACTCCAAAATGAATCATGGACAAGGCGTTACTAAAATCAGAACAAT
AACCTACTACTGATATAACTATATAAGTTACATACAGTGTATTTAGTTTCTGGTTTGCCCCATC
CACTGCGCTCTGGTCTAGATCGTCCAAGTGTATGAGCTCCTGACAATGCAACAATTTCCTACAG
ATCACAAAACAGATGTAACTAGCAAATCCCCAGAAAAAGTTGTTTGGAATATTGAATGAAGCAA
TCTGCAAGTACCTTGTCACTCAGGCCCATTCTATAGAATACTTCTCGTAGATGTTCCGCAGGTG
AAGGAGGGCCAGCAGCTGAAAGGGTGGAAATGTAAAATATAGGGAACAAAATTGCAACAGAAAG
CACATGCATATGAAAGAGGATTAGATCATCATCAGCACTAGATTTCAAATATCAAAGTACACTA
TAAGACACAGCAGGAAATATATCAATGTCATGTGAATACAAAAACAAACAGCTGAAAGTGCTGC
AATTCTTGGGGAGCTATATTTTATCAATCTCACAGGTTAAGTGCAATCATAGCACTGATTTTCA
TTCTGCACAGCATGTGCAGCTTACAATTTTTCTGTTATATTGCAATTGGGGTAATCTTTCTTAC
ACATTTGCATGTCCAAAATGTTATTACACCAGATTACAGAGCTCACGGTGGCAATATTTCATAA
GAAACTTGTTTTTTCATGCTTTTAGCCAGTTAGCATCAATTTTAGTACTTCATGAAGTAAAACC
CATAGATACATGGATAAGATACCACGCCTAAACCTTCTAAATAAGTTGAATCTGAGAGGCATTA
CCACGAATGTAATAGCCTATTATAGGCAGACCATTGTCCATTTAAGAAAATAAATTTATCATTA
AAGAAGAAATAAAACAGGACTATTACAGTAGGTTAGCAAGAAAACTATCAATTTATATTAATGT
CTTCTATTGTTGACACTACATCTAAATAATTTGATTTTGATGTAAATAGATTGCAGACAAATAA
AGATGGATATGCGCGATTTCCTATGTCAATCAGGTATCTCAATTGCATGATAACCCATAAATTG
AGATTAAACAAGAGGACCAATAGAGTATATTTGTAACTTCATTTCTGAGTGTTGGAACACATAT
CAGTTCTGCTCTGAAAGTTATCAATATTCTAGGTTTAATGAATAAGGAGAAAGTAGAATTTGCG
AAATGAAGCTGCAAGAAGATGGCCAATTGTAATAGCAACTTGGGATCAGTGTGACATGACACTA
AAGGTACAGCATTATATTTTAGTTTCCAGATGATAAATCACGGTAACGAACAAATTTGGGCTAC
AGAACCCAAAAGCTACTGACCAGGAAGTCTCCCCTCTGGCGGGCATTGTTCAGGGGCAGCAACA
TCAACCCTTCCATAGATCATGGGGATCTTGGGGCCACCGGCTTCCTGAGTTTTAAAACAGACCA
AAGCAATCATATCAGCATTAAATAATAAATACTGTTTGAATGATAGTTCATAGTTATCATTAGA
CTAAAGTGACAAAAGGACCTCAATGGCTGTAGCACTGGCGAGCTGAAACAGATCTGCATAAGTG
ACACCTGCATGCTTGTCTTTGATGGGCTGGATCAGCTTCAAAGCATTCACAAGACCTGAAGTAG
AGGGTTATTGTAAGGATAACCATGAATCACGAACAATAGATAATGACAGAACAGAAGCACTACC
TGCATTAGCCGCATGTTTTAACTCAATTTCGAATCTCAAGCTACCATTGGCACCACCACACTTT
GGCCATTCAGTAATGTTCTTGTCATAAGTACCAGCATCATGCCACCCTAACCGAACCTGCAACC
AAGGTTAACCCAGCAGACAAGTCATAAATATGCAATGTTCGATCAAGCAGATGCAGAACCATGA
ACTGCACAAATCTAGCGAATATTGTGCATAGAACGTGTTACAGTCTTCTTGCACACAGGTGAAC
TAGAGCAGTTGCATCTTCTCGAAGTAAAAGTTACTGTTTTAAATAGCATAATCGACCAGTTAAC
TAAACACACAAAGAACAATCTTTTGTAGAGATGCGAAATCCATGGATATAGCTAGACAATCTAA
AATCCCATTATACTCTTCGAACCATACAAACCCGCAATCTTTGCACAAGAACACTAAAGCAGCA
AAGCATATATTAGCATACCAGGATGGGATGGCAGGAGGTGGACTTGAGCAGCTGCTTGACGTCC
TCCCGCGCGCCCCGCAGCTCAGCCGCCGCGTCCCCCGCCGCCGCCGCCGACGAGCTCGCCGGAC
GCCTCCCGAGCTCCTTCACGGGGGAGAAAATGAACAAAAATCATCAAGAAAGGGACATCGCTAA
ATCAAGAACCGGTCCGCCGCCGGCGCGGGTAATGAACAGCGAAAGGGAGGGGGGGAGGCGTCGT
AGGTGGTACTAGTACCTGAAGAGAGGGGAGGGGAGAGGCGGCGGAGAGGCCGCGGCGGAGGAGG
CGGTGGACGACGGCCATGTCGGCGGCGGCGGAGGTGGGGAGAGGAGGGTTTTGGTGGCGTTTTG
GGAGTGGTTCGCTGCTCCGTGGTCAGGGGAGGAATCTACCAATAGCAAAATTTCACTCTCTTTT
TGTGTGTGTGTGTGTGTGTGTTTTTTTTTTGGAATTCTTTAACTAGTTCGTTTGATTGGGGGGG
AGAAGAGTGGAAGACACATACTCCCTCCATCCCAAAATTTTCGACACCGTTGACTTTTTTAAAA
ATATTTAACCATTAATCTTATTTAAAAAAATTAAGTAATTATTAATTCTTTTCCCGTCATTTGA
TTTATTGTTAAATATATTTTTATGTATACATATAGTTTTACACATTTCACAGAAGTTTTTGAAT
AAGACGAATGGTCAAACATATTTAAAAAAGTCAACGGCGTCAAGGAGGGAGTATTTAGGTTGAG
TTATTTAGGCCTCTTCTTTTTCTTAAGTTCAAACTTCAATTTTCTCGTTTTTATTAGCACGTTT
TTCAAACGGTTAAATGTTACTTTCTTTTAAAAAAATAATTATATATATGGAAGTTGTTTAAAAA
ACAAATAAATCTATTTTTTCAAGTTTATAATAGTTAATATTTAATTTTTTTAAGATAATTAATC
ATATACTAATGAGCTTTCTCATTTCGCGTACAATACAAATCTTCCTCCTCCATGAGAAACCGAA
GGAACCCGTGCTAGCATGTTGGGTGTCACAACTCACAACTCGCAACTATAGTTTGATCTTAATG
CTAAATAAGTATGTTAGAAATAATGTAGGAACTCACAATTCACATTACTATCTTCGTTATATAA
AAACCTAGTATTATCTAACTGAGGTTGTGATGCATCTAATTGTTGACCTGAACAAATTTGGTTG
CTCTTTTTCGAGCTATCTTTATAATATAGTACAATAGATAAGATGGCAAGCAGTAACACAGCTC
AATACACAGCACCAGCATCACATTTACAATAAGTTAAATTTCTGGATGGGTAGTAAAACCAGAA
TATGCTCTATAGTAGCAAGAACAAACAAGGTATTATCTTGTTTATCACTCGCCAAAATGCAGTT
CATCGGCAGCTGACGCCAGCTATTCAAGTGAAATACCCTGTGCCATTTCAGCGATAATAAGCAA
GTCAAGTTGACTGGACATTTTCTCCATTCCAATAATGGAAGTGAGGAAGTCTTTAATCTCATTT
ACCTTTGGAGGATCAAACTTTGCCCCAAGATTGCTCAGTTTGGCATGAGCTTCAGCATAGTCTT
CGAAAAATGCATCCTGATCCTCAGCATACTTTTCAGCATGGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.758442031
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017