Plant Circular RNA Database

Detail information of Os03g0270200_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os03g0270200_circ_g.5
					
						ID in PlantcircBase
						osa_circ_019087
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 9030998-9032543  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0270200						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os03t0270200-01);Splicing factor P
WI domain containing protein. (Os03t0270200-02);Conserved hypoth
etical protein. (Os03t0270200-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0270200_circ_g.4 Os03g0270200_circ_g.6 Os03g0270200_circ_g.7 Os03g0270200_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0270200-01:5
Os03t0270200-03:5
Os03t0270200-02:5

General Information
CircRNA Name	Os03g0270200_circ_g.5
ID in PlantcircBase	osa_circ_019087
Alias	NA
Organism	Oryza sativa
Position	chr3: 9030998-9032543 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0270200
Parent gene annotation	Hypothetical conserved gene. (Os03t0270200-01);Splicing factor P WI domain containing protein. (Os03t0270200-02);Conserved hypoth etical protein. (Os03t0270200-03)
Parent gene strand	-
Alternative splicing	Os03g0270200_circ_g.4 Os03g0270200_circ_g.6 Os03g0270200_circ_g.7 Os03g0270200_circ_g.8
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0270200-01:5 Os03t0270200-03:5 Os03t0270200-02:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGGAATTTCTGGAAGGAGATGGAGAACGCCTCCTAGGAGAAACAGATCGCCGCCTACCGCGA
GGCGACAAGGAGATGCTCCTGGACCTAAGGCTTTCCctatgttgtgatggagatttttctccag
ggctcaaatcatcatgtgctttctttagttccagatctgctgagaaatccttaatttttctgcg
tgatgaat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTATGTTGTGATGGAGATTTTTCTCCAGGGCTCAAATCATCATGTGCTTTCTTTAGTTCCAGAT
CTGCTGAGAAATCCTTAATTTTTCTGCGTGATGAATTTGCTTTTCGTGCATTCTCTCTGAACAT
AAACAAAAGAACCGTTTATATCAACAATAAGAAACTCAAACAACCCTTTTGAAAGAAGGGATAG
GTAGAATGGAGACTACCTTGCACGACTGCCCTCCTCTTCTCCACTGCTATCTGTTCTGACCTGA
CTGGGCAAGTGCTTATCAGTGCCCTTCAAAGAACTGCCAAAAAAGATGGCCAAGCCTTCAGTAT
GCACATTTGATCACAAATATGTGGAGAAGAAATGAAAGAAATAAATAAATCGATACGGACGAGT
AGATACCTATCGCGTGTCGAGTTCCTTTCTGGCTTGTTTGGAGAATTCAAGGATTTTGTCAGCT
TACGATGCTCAGAATCCGATGAAAGATGGCCACTCACTTCTGTATCATTCCTATTGTCATCGTG
TGATCTTTCTTTGTTCCTGATGTAACAGAAGTAAGAGAACAGCTTTTCTGAATAATTGTACTGA
AAGACAAACAAAATATGCCATGCACATTACCTTTGAAGCACATCTACATCGTTACTGGAGGGAA
TGCCGTTTGTTCCTTTTTCAATGTCTCTACTCAAGCTCCTGCGAGAATGGATTGGGCTCCTATC
GTGTGGACTGGTACTCCTTTTAAACATCAGCATAAATAATCGAATCAGAAAATAATTACATGCA
GGAAGACTACAATAGGTGCACAGCAAATTCAATTGCTCGGTACCTCCTTCGTTGTGGAGAGGGC
CGACGGTTTGCAGAACGACTTCTGGGTGAAATTGGCGATCTCCTAGGGCGTTTTGGTGACCTCA
ACCGCGGAGAGCCTCGAGGAGAGGGGGATCTTCGTCTTCCTGGAGATCGTGACCTTGGCCTGCG
TCTACCCGGAGATGGAGACCGTGGCCTACGTCTTCCTGGTGAAGGGGACCGTGGCCTACGTCTT
CCTGGTGAAGGGGACCGTGGCCTACGTCGTCCGGGTGAAGGGGACCGTGGCCTACGTCGTCCGG
GTGAAGGGGACCGAGGCCTACGTCTTCCTGGAGATGGAGACCAATGCCTGTCTAGAGATGACCT
GCGCCGAGGAGATCTATGACGTGCAGGAGATGGTGATCTTGGTGCACGACCTGGAGACCGGCGA
TGGTGTGGAGATGGTGATCTCTGACGCACAAAAGGTGGAGATTTCCTGCGAATATGAGATCTAC
GATGAGGTGACGGAGATCGATGTCTTGGTACTGAAGGTGATCTTCTGGAATACGGTGATCTCCG
CCTCGACATCGAAGGGGTACTTCTTGGAGAACGCTTTCGTGGAGAAAAAGAACGCCTAGGTGAA
ACTGAGCGCCTTGAAGATCGTTGCTGTCTCCCAAAAGAAATGGAATTTCTGGAAGGAGATGGAG
AACGCCTCCTAGGAGAAACAGATCGCCGCCTACCGCGAGGCGACAAGGAGATGCTCCTGGACCT
AAGGCTTTCC
						
					

			
		

Sequences
Splice junction sequence	AATGGAATTTCTGGAAGGAGATGGAGAACGCCTCCTAGGAGAAACAGATCGCCGCCTACCGCGA GGCGACAAGGAGATGCTCCTGGACCTAAGGCTTTCCctatgttgtgatggagatttttctccag ggctcaaatcatcatgtgctttctttagttccagatctgctgagaaatccttaatttttctgcg tgatgaat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTATGTTGTGATGGAGATTTTTCTCCAGGGCTCAAATCATCATGTGCTTTCTTTAGTTCCAGAT CTGCTGAGAAATCCTTAATTTTTCTGCGTGATGAATTTGCTTTTCGTGCATTCTCTCTGAACAT AAACAAAAGAACCGTTTATATCAACAATAAGAAACTCAAACAACCCTTTTGAAAGAAGGGATAG GTAGAATGGAGACTACCTTGCACGACTGCCCTCCTCTTCTCCACTGCTATCTGTTCTGACCTGA CTGGGCAAGTGCTTATCAGTGCCCTTCAAAGAACTGCCAAAAAAGATGGCCAAGCCTTCAGTAT GCACATTTGATCACAAATATGTGGAGAAGAAATGAAAGAAATAAATAAATCGATACGGACGAGT AGATACCTATCGCGTGTCGAGTTCCTTTCTGGCTTGTTTGGAGAATTCAAGGATTTTGTCAGCT TACGATGCTCAGAATCCGATGAAAGATGGCCACTCACTTCTGTATCATTCCTATTGTCATCGTG TGATCTTTCTTTGTTCCTGATGTAACAGAAGTAAGAGAACAGCTTTTCTGAATAATTGTACTGA AAGACAAACAAAATATGCCATGCACATTACCTTTGAAGCACATCTACATCGTTACTGGAGGGAA TGCCGTTTGTTCCTTTTTCAATGTCTCTACTCAAGCTCCTGCGAGAATGGATTGGGCTCCTATC GTGTGGACTGGTACTCCTTTTAAACATCAGCATAAATAATCGAATCAGAAAATAATTACATGCA GGAAGACTACAATAGGTGCACAGCAAATTCAATTGCTCGGTACCTCCTTCGTTGTGGAGAGGGC CGACGGTTTGCAGAACGACTTCTGGGTGAAATTGGCGATCTCCTAGGGCGTTTTGGTGACCTCA ACCGCGGAGAGCCTCGAGGAGAGGGGGATCTTCGTCTTCCTGGAGATCGTGACCTTGGCCTGCG TCTACCCGGAGATGGAGACCGTGGCCTACGTCTTCCTGGTGAAGGGGACCGTGGCCTACGTCTT CCTGGTGAAGGGGACCGTGGCCTACGTCGTCCGGGTGAAGGGGACCGTGGCCTACGTCGTCCGG GTGAAGGGGACCGAGGCCTACGTCTTCCTGGAGATGGAGACCAATGCCTGTCTAGAGATGACCT GCGCCGAGGAGATCTATGACGTGCAGGAGATGGTGATCTTGGTGCACGACCTGGAGACCGGCGA TGGTGTGGAGATGGTGATCTCTGACGCACAAAAGGTGGAGATTTCCTGCGAATATGAGATCTAC GATGAGGTGACGGAGATCGATGTCTTGGTACTGAAGGTGATCTTCTGGAATACGGTGATCTCCG CCTCGACATCGAAGGGGTACTTCTTGGAGAACGCTTTCGTGGAGAAAAAGAACGCCTAGGTGAA ACTGAGCGCCTTGAAGATCGTTGCTGTCTCCCAAAAGAAATGGAATTTCTGGAAGGAGATGGAG AACGCCTCCTAGGAGAAACAGATCGCCGCCTACCGCGAGGCGACAAGGAGATGCTCCTGGACCT AAGGCTTTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.115368494

Conservation Information
Conserved circRNAs	NA
PMCS	0.115368494

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9032446-9031250(+)
9032352-9031000(-)
						
					

						Potential amino acid sequence
						
							MEFLEGDGERLLGETDRRLPRGDKEMLLDLRLSLCCDGDFSPGLKSSCAFFSSRSAEKSLIFLR
DEFAFRAFSLARLPSSSPLLSVLT*(+)
MSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQRSPSPHHRRSPGRAPRSPSPARHRS
PRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPS
PGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRSRSANRRPSPQRRRSTSPHDRSPIH
SRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDTEVSGHLSSDSEHRKLTKSLNSPNK
PERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENARKANSSRRKIKDFSADLELKKAHDD
LSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSPSRNSISFGRQQRSSRRSVSPRRSF
SPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQRSPSPHHRRSPGR
APRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRS
PSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRSRSANRRPSPQRR
RSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDTEVSGHLSSDSEH
RKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENARKANSSRRKIKDF
SADLELKKAHDDLSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSPSRNSISFGRQQR
SSRRSVSPRRSFSPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQR
SPSPHHRRSPGRAPRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRP
RSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRS
RSANRRPSPQRRRSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDT
EVSGHLSSDSEHRKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENAR
KANSSRRKIKDFSADLELKKAHDDLSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSP
SRNSISFGRQQRSSRRSVSPRRSFSPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSH
IRRKSPPFVRQRSPSPHHRRSPGRAPRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRR
RPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSP
KRPRRSPISPRSRSANRRPSPQRRRSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRN
KERSHDDNRNDTEVSGHLSSDSEHRKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSG
EEEGSRARENARKANSSRRKIKDFSADLELKKAHDDLSPGEKSPSQH(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9032446-9031250(+) 9032352-9031000(-)
Potential amino acid sequence	MEFLEGDGERLLGETDRRLPRGDKEMLLDLRLSLCCDGDFSPGLKSSCAFFSSRSAEKSLIFLR DEFAFRAFSLARLPSSSPLLSVLT*(+) MSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQRSPSPHHRRSPGRAPRSPSPARHRS PRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPS PGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRSRSANRRPSPQRRRSTSPHDRSPIH SRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDTEVSGHLSSDSEHRKLTKSLNSPNK PERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENARKANSSRRKIKDFSADLELKKAHDD LSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSPSRNSISFGRQQRSSRRSVSPRRSF SPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQRSPSPHHRRSPGR APRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRS PSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRSRSANRRPSPQRR RSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDTEVSGHLSSDSEH RKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENARKANSSRRKIKDF SADLELKKAHDDLSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSPSRNSISFGRQQR SSRRSVSPRRSFSPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQR SPSPHHRRSPGRAPRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPGRRRP RSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPRRSPISPRS RSANRRPSPQRRRSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRNKERSHDDNRNDT EVSGHLSSDSEHRKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSGEEEGSRARENAR KANSSRRKIKDFSADLELKKAHDDLSPGEKSPSQHRESLRSRSISLSPRGRRRSVSPRRRSPSP SRNSISFGRQQRSSRRSVSPRRSFSPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSH IRRKSPPFVRQRSPSPHHRRSPGRAPRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRR RPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSP KRPRRSPISPRSRSANRRPSPQRRRSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRN KERSHDDNRNDTEVSGHLSSDSEHRKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRTDSSG EEEGSRARENARKANSSRRKIKDFSADLELKKAHDDLSPGEKSPSQH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0270200_circ_g.5

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