Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G13440_circ_g.3 |
ID in PlantcircBase | ath_circ_002385 |
Alias | At_ciR4486 |
Organism | Arabidpsis thaliana |
Position | chr1: 4608691-4609189 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G13440 |
Parent gene annotation |
Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic |
Parent gene strand | - |
Alternative splicing | AT1G13440_circ_g.1 AT1G13440_circ_g.2 AT1G13440_circ_g.4 AT1G13440_circ_g.5 AT1G13440_circ_g.6 AT1G13440_circ_g.7 AT1G13440_circ_g.8 AT1G13440_circ_g.9 AT1G13440_circ_g.10 AT1G13440_circ_g.11 AT1G13440_circ_g.12 AT1G13440_circ_g.13 AT1G13440_circ_g.14 AT1G13440_circ_g.15 AT1G13440_circ_g.16 AT1G13440_circ_g.17 AT1G13440_circ_g.18 AT1G13440_circ_g.19 AT1G13440_circ_g.20 AT1G13440_circ_g.21 |
Support reads | 3/1 |
Tissues | leaf/root, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G13440.1:3 AT1G13440.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.268776118 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |