Detail information of AT2G14835_circ_g.1


General Information
CircRNA Name AT2G14835_circ_g.1
ID in PlantcircBase ath_circ_013360
Alias 2:6367175-6369306
Organism Arabidpsis thaliana
Position chr2: 6367175-6369306  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G14835
Parent gene annotation Expressed protein
Parent gene strand +
Alternative splicing AT2G14835_circ_g.2 AT2G14835_circ_g.3 AT2G14835_circ_g.4 AT2G14835_circ_g.5 AT2G14835_circ_g.6
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G14835.2:5
AT2G14835.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACTTCTCATATGATCATTAAATGCAGATATGGCCTCCTATGATGGTAAAAGATGCAGGATCT
CGGCTTCATGCTCTGTTAAGGGAAGTAATTACGCAGccgagaccctaagcttgattcgatctaa
ctctggcttatcaattctgatcttgtcgtttcgcaatggtggtctgcaaatgcaaaaaggtatg
ttcataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGAGACCCTAAGCTTGATTCGATCTAACTCTGGCTTATCAATTCTGATCTTGTCGTTTCGCAA
TGGTGGTCTGCAAATGCAAAAAGGTATGTTCATAATCTCTATTTATGTCACTCGTTTACCGATT
TCAATTGTACCATTTGATGATCTGTTGGAGATTTTTCTTGTCAAATCAAAGTGTTCGTGATTTC
TGATCTTGCAGCTGAGTTTTTCTTTCAATTGAAGTAATTTTCGATTTGTTTGCATGTATGTATC
TTGTTTTCCCCTGATTTGACGTATTTTGATCTGGATTAGGGGAGAATTATAACGATTTGGTTGT
TTGCAAAGCTCGTCTTGTGAATGCTAATGTTGCCATTGCTCTTGTTTTTGCTAGGCTACCAGGC
TGTATTGCTTTGTTCACAAGGCCCCTGTTTGCGGCGAATGCATTTGTTTCCCGGAGCATCAAAC
TTGTGTGGTATGTTTGATCAATTCATTTTCTTGTTGTTACCGCGAACTGATAGTTTTATCGAGG
AATTAGTCTCTTGTTGTTTGGATTAGAAATTGAAAAGTTGTGTGGAAGATATCTAACTGTTGGA
CAGATTGCTGCTTATGGGAACAGAAGCATTTGGTTTTGTTTAGTTATTGATTGTTATGTTTGTT
CATTTGTAATGGATGATCTAGATTTACGGTCCCCAAGTGGTTAGATATAATTGACACTCTCAAC
AACTTAATACTTCGAAAAATATGATTTACTGATGTTTTCACAGTGCTCCATCATAACAGACGCG
AGATAAATATTAGTGGCGGCAAGATCTATTTCATGGGGCATATACATTTTGTTCTATTTTATAA
TCTTTCTGCAGTTTTTTTCCTTCATTATAAGTTGAACAATGTTCAGAATTTCTCGTTTTCTTTT
TGCTACTTTATATGGTAGACAAGGTGGGACAATGATAGAAATATGTTTTTATCATGTGGTAATC
AATAGGTCCGGACGTATTCAGAATGGGTGATAGATGGAGAGTATGATCAGCCAAAGTGTTGTCA
ATGCCAAGCAACATTTGATGAGGGGGCAGGTCATCAAGTCACTCGGTTAGGTTGCTTGCGTATG
TTGTCTGACTCTTACCATTGTTGGATTGGATTTTTATTTCTGAATTTTGATAATTAAATTAATG
GAACATTTTTTACCCTCTATTTGTATCAGATGCTATACATACAAGCTGCCTGGTTTCGCTTATC
AAGAGTTTTCCTCCTCATACTGCACCTGCTGGTTATGTGTGCCCAGCATGTAGCACACCTGTAA
GCGTTATTGATTCATATATATTTATTAGTAAACTTCCTTTTGTGTTCTTCATGTTTCTATCGCA
TTGTTTTCCGTGTGTACTTGTATTGGCTGGAGCTCTTTTTTGGTGTCTAATATTGATACATAGA
TTTAGAAAAATATTTGAGTTGGTGTGATTTCCTGTGTTTCTCTATGATAATATTGAGCACTTCA
TCAGTGTTGTTCTTACTTTCTGGCCATAGAAACATGATAAAGACTATTTGCATGTGGAGACCGG
GTGCTTTTTTATGAAGATTTGGGTGTTTTGTTTTGGACCTAACGTTTTAGGCAATTTTGTATGG
TTTGATTGTTCGGCTGTAGTTGTACATGATTTTCTGGTTCAGTTAGCTTCTTCAAGTCAGTAGC
AACCCGTGTTTGTAATGTAGCAGATGAAAGCCTAGCAATCAAAATTACACCTAGACAGATAAAT
CTTGGGGAAGTAACTAAAATTAGAGTATTTAATGATTGATGATTCATGTTCTATTGACTCTTTT
CTATCAAATTTCGGATGATTTTTAGCTGTTTTGGTGTGTAATACTTCCCTCTGTGATGTAATAT
ACTGGAGGTAGCTATCTAGATTATTTTGGTTCACCAGGGTTTGAGCTAATAGCCATCCCGATTG
TATTCCATTCCTCTTTGTCCTTATGTTTTACTTGAAAAACATTTTGTATAGCCTGGTTTTACTT
TACTTTGAAGTGTTGTTTCGTGCTTGGAAGAGTGCCGCAATATAGTTCTCACTTCTCATATGAT
CATTAAATGCAGATATGGCCTCCTATGATGGTAAAAGATGCAGGATCTCGGCTTCATGCTCTGT
TAAGGGAAGTAATTACGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109496334
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020