Plant Circular RNA Database

Detail information of AT2G14835_circ_g.6

			
						 General Information
					
						CircRNA Name
						AT2G14835_circ_g.6
					
						ID in PlantcircBase
						ath_circ_013365
					
						Alias
						Ath_circ_FC1206, AT2G14835_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 6369536-6370009  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI-full, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
					
						Parent gene
						
							AT2G14835						
					
						Parent gene annotation
						
							Expressed protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G14835_circ_g.1 AT2G14835_circ_g.2 AT2G14835_circ_g.3 AT2G14835_circ_g.4 AT2G14835_circ_g.5 						
					
						Support reads
						23/3/NA
					
						Tissues
						inflorescences, whole_plant/seedlings/leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G14835.1:2
AT2G14835.2:2

General Information
CircRNA Name	AT2G14835_circ_g.6
ID in PlantcircBase	ath_circ_013365
Alias	Ath_circ_FC1206, AT2G14835_C1
Organism	Arabidpsis thaliana
Position	chr2: 6369536-6370009 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI-full, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI2
Parent gene	AT2G14835
Parent gene annotation	Expressed protein
Parent gene strand	+
Alternative splicing	AT2G14835_circ_g.1 AT2G14835_circ_g.2 AT2G14835_circ_g.3 AT2G14835_circ_g.4 AT2G14835_circ_g.5
Support reads	23/3/NA
Tissues	inflorescences, whole_plant/seedlings/leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G14835.1:2 AT2G14835.2:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATATTATGCAGACG
ATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAGactggtcttgagaagaatttacttggga
accatccagtttctcgatccaccgaatctcgtagcccaccaccggcatttgcttcggatgcatt
aattaata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 158
Transcript exons: 6369536-6369620,6369937-6370009
ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC
CACCACCGGCATTTGCTTCGGGACAGGCAGAACTCCGAGACTCTATATTATGCAGACGATGAAG
ACGGCAATCGTAAAAAGTACTCAAGAAGAG
Transcript length: 175
Transcript exons: 6369536-6369597,6369897-6370009
ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGGC
TTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATA
TTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG
Transcript length: 192
Transcript exons: 6369536-6369635,6369918-6370009
ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC
CACCACCGGCATTTGCTTCGGATGCATTAATTAATAGAAAGGAGTACCCGCTGTAGACAGGCAG
AACTCCGAGACTCTATATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG
Transcript length: 241
Transcript exons: 6369536-6369664,6369898-6370009
ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC
CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG
GCTTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTA
TATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG
Transcript length: 367
Transcript exons: 6369536-6369790,6369898-6370009
ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC
CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG
GAATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTTCA
GAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCCCTGGAC
TTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATA
TTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG
						
					

						Genomic sequence
						
							ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC
CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG
GAATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTTCA
GAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCCCTGGAG
TAAGATATTCTCTTAAAAACTTGGTGTTTTCACAAAAACTACGTACAGTTTCTGTTTTCCTTTA
TGAGTTGTCACAGTTTTATCTATTTGTTGCTGTCGTATATAGCTTGCTGCTGCTGCTGCACGGA
AAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATATTATGCAGACGATGAAGACGG
CAATCGTAAAAAGTACTCAAGAAGAG
						
					

			
		

Sequences
Splice junction sequence	GCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATATTATGCAGACG ATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAGactggtcttgagaagaatttacttggga accatccagtttctcgatccaccgaatctcgtagcccaccaccggcatttgcttcggatgcatt aattaata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 158 Transcript exons: 6369536-6369620,6369937-6370009 ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC CACCACCGGCATTTGCTTCGGGACAGGCAGAACTCCGAGACTCTATATTATGCAGACGATGAAG ACGGCAATCGTAAAAAGTACTCAAGAAGAG Transcript length: 175 Transcript exons: 6369536-6369597,6369897-6370009 ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGGC TTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATA TTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG Transcript length: 192 Transcript exons: 6369536-6369635,6369918-6370009 ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC CACCACCGGCATTTGCTTCGGATGCATTAATTAATAGAAAGGAGTACCCGCTGTAGACAGGCAG AACTCCGAGACTCTATATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG Transcript length: 241 Transcript exons: 6369536-6369664,6369898-6370009 ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG GCTTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTA TATTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG Transcript length: 367 Transcript exons: 6369536-6369790,6369898-6370009 ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG GAATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTTCA GAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCCCTGGAC TTGCTGCTGCTGCTGCACGGAAAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATA TTATGCAGACGATGAAGACGGCAATCGTAAAAAGTACTCAAGAAGAG
Genomic sequence	ACTGGTCTTGAGAAGAATTTACTTGGGAACCATCCAGTTTCTCGATCCACCGAATCTCGTAGCC CACCACCGGCATTTGCTTCGGATGCATTAATTAATATATCATCATCTTCTCATACACAAGAAGG GAATAACCTTCCTGATGGTTATTCAGTAGCTGGAAATGGAGAATATTCCAAATCTGCGGTTTCA GAGATAGTTGAGATAGATGTTCCTGCTTCTGCTGGGAGTTACATGAAAAGCTCAAGCCCTGGAG TAAGATATTCTCTTAAAAACTTGGTGTTTTCACAAAAACTACGTACAGTTTCTGTTTTCCTTTA TGAGTTGTCACAGTTTTATCTATTTGTTGCTGTCGTATATAGCTTGCTGCTGCTGCTGCACGGA AAGGAGTACCCGCTGTAGACAGGCAGAACTCCGAGACTCTATATTATGCAGACGATGAAGACGG CAATCGTAAAAAGTACTCAAGAAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.625834283

Conservation Information
Conserved circRNAs	NA
PMCS	0.625834283

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019

circRNA

Detail information of AT2G14835_circ_g.6

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