Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0445600_circ_g.9 |
ID in PlantcircBase | osa_circ_033628 |
Alias | Os_ciR5553 |
Organism | Oryza sativa |
Position | chr7: 15208702-15210457 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os07g0445600 |
Parent gene annotation |
Conserved hypothetical protein. (Os07t0445600-01);Conserved hypo thetical protein. (Os07t0445600-02) |
Parent gene strand | - |
Alternative splicing | Os07g0445600_circ_g.8 Os07g0445600_circ_g.10 Os07g0445600_circ_g.11 |
Support reads | 3/2 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os07t0445600-02:5 Os07t0445600-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_017013 |
PMCS | 0.441743737 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15208798-15208704(-) |
Potential amino acid sequence |
MAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQ IAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNL GLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE TRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGRKEKIASGLLNP FLAHLKVAQDQIAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLE DAISIQSNDNLGLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEE NSKVQLLRVLETRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGR KEKIASGLLNPFLAHLKVAQDQIAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERV TTIESEILQLEDAISIQSNDNLGLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTP AVHDETTTHEENSKVQLLRVLETRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRL (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |