Detail information of Os07g0445600_circ_g.9


General Information
CircRNA Name Os07g0445600_circ_g.9
ID in PlantcircBase osa_circ_033628
Alias Os_ciR5553
Organism Oryza sativa
Position chr7: 15208702-15210457  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os07g0445600
Parent gene annotation Conserved hypothetical protein. (Os07t0445600-01);Conserved hypo
thetical protein. (Os07t0445600-02)
Parent gene strand -
Alternative splicing Os07g0445600_circ_g.8 Os07g0445600_circ_g.10 Os07g0445600_circ_g.11
Support reads 3/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0445600-02:5
Os07t0445600-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCTGATCCTGGGCGACCTTCAGGTGTGCCAGGAACGGGTTTAGCAGGCCAGAGGCTATCTTC
TCCTTCCGGCCATTCACTATCACCACCAAATCGAACatcaaacgtgaagcaccaaagcgctctg
caaacgcaatcaagtaacccagattgtcgatgtcaaacccagctgccacagcacgtgcaaaagc
catagcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 609
Transcript exons: 15208702-15208854,15209148-15209209,15209312-15209364,15
209959-15209998,15210078-15210198,15210278-15210457
ATCAAACGTGAAGCACCAAAGCGCTCTGCAAACGCAATCAAGTAACCCAGATTGTCGATGTCAA
ACCCAGCTGCCACAGCACGTGCAAAAGCCATAGCCTGCTCTTTCCTTAAGACATTTTTTCGGGT
TTCAAGCACTCTCAGCAGTTGGACTTTTGAATTCTCTTCATGTGTTGTAGTCTCATCATGCACT
GCTGGTGTAGGCTGTGATCCAGGCTGGTATATAACAATAGCCTTATCTGCATCAGGGCTGTGAT
TCGCTCGTGTACCTTCGTTGCTTTCAGTCAATTTTCCTCCATGATCTTCTACAGATCTTAGCCC
AAGATTATCGTTGCTCTGAATAGAGATGGCGTCCTCGAGCTGCAAGATCTCGGATTCTATCGTC
GTCACTCGCTCAAGCACCTCCGGAGTACTCACGAAGCGCACGAATCTCTCCACGGTGCCTCTTG
TAAACCATGGCGCGCCAACCCCTGAGCTCGGCTCAAGCGTAATTGAGTATCCTCCCTTTGCAAT
CTGATCCTGGGCGACCTTCAGGTGTGCCAGGAACGGGTTTAGCAGGCCAGAGGCTATCTTCTCC
TTCCGGCCATTCACTATCACCACCAAATCGAAC

Genomic sequence ATCAAACGTGAAGCACCAAAGCGCTCTGCAAACGCAATCAAGTAACCCAGATTGTCGATGTCAA
ACCCAGCTGCCACAGCACGTGCAAAAGCCATAGCCTGCTCTTTCCTTAAGACATTTTTTCGGGT
TTCAAGCACTCTCAGCAGTTGGACTCTGTAAGTTGTTCATAAGAGAATGTATCTGTTAACAGCT
TCCCCATGTAGGACAGGTAAGTATCAAAAGAAACTGAATGCGATCTTAGAGCATATATGTAGTA
GCTTGAATAAAAATCAAAACAACAAATAAAGTAAATGAATACCAACATTCTCTTTTTTATTCTC
CACTCTATGCTGTGATTTGTAAAACACAGCTACTTTCAGGGATATAAATATATATATTTTTGTT
CCCGGAAATGGAAAGTTTTAAAAAAATACAAAACAAAAATATTCTTGGTGGTGCCAATATACTT
TGAATTCTCTTCATGTGTTGTAGTCTCATCATGCACTGCTGGTGTAGGCTGTGATCCAGGCTGT
CATCAATTGAAAATGCCAGTGGGGTCAGTGCTAGTTCATGATACATACAGGAAAGGAAGAAGGA
TGCACATACAAAATTTACAAATATATAATCAGACCTGGTATATAACAATAGCCTTATCTGCATC
AGGGCTGTGATTCGCTCGTGTACCTGTTAGTGCATAGATAGTATCAGGTTATGTTATACAATAA
ATAATAGGATACAAAAGCTACTTTAAGACAAGGTAACTGAAATTGGAAAATAAAAACTCAATTG
GTCATCCTGTCAATCTGTCATCAGGTTCTTTCGGAACAGTAGGACACAATACTTCCTATAATTG
TCTGCTAGCTCAAGATTGAGACCTAAATCAATAAATCATGGTAATAGTTTAAGAACTCCATCTT
TAAAACTTGTATGAAAATTTAAAAGGTATAAAGTAAGAGAACAGTTTTATTGTAGCTACAAAAT
AATAGAAGGAATTGCCTTGCCCCCTAAATCAGAATATATTAATTGGCACTTCATACATACCTAC
AACATAGTTGTATGTACCTAACTCAATAATAGGTTATGATGTCACATCAAACTCCATAATGACT
ACATTCTAAATTCTAAAACAGTCAGATCGGACTGCAGCTTCCTCTTCTTTTTTTTTTTTGTGTG
TGTGTGTGGCCCAATGGAAAGCTGTTACAGATGTATGCGTTCCCCAGAGGACACAAGCAAGCAC
CATTCAATGCATCATGATAAATAACAACAATAATGTTATACCTTCGTTGCTTTCAGTCAATTTT
CCTCCATGATCTTCTACCTTCCAGATAGCAAACAAGAATGCGTCACCTTTCTGCAAATAACAAG
AATAAACTCATAAACGACAATCGTCGACTTACAGATCTTAGCCCAAGATTATCGTTGCTCTGAA
TAGAGATGGCGTCCTCGAGCTGCAAGATCTCGGATTCTATCGTCGTCACTCGCTCAAGCACCTC
CGGAGTACTCACGAAGCGCACGAATCTGCAAAGAAGTAGCATGTGAATAACCCGATTGGAAATG
CCAATGCCACAGGTAATTGTCATAACCAAAGGCCACCAACCTCTCCACGGTGCCTCTTGTAAAC
CATGGCGCGCCAACCCCTGAGCTCGGCTCAAGCGTAATTGAGTATCCTCCCTTTGCAATCTGAT
CCTGGGCGACCTTCAGGTGTGCCAGGAACGGGTTTAGCAGGCCAGAGGCTATCTTCTCCTTCCG
GCCATTCACTATCACCACCAAATCGAAC
Conservation Information
Conserved circRNAs osi_circ_017013
PMCS 0.441743737
Functional Information
Coding potential Y
Potential coding position 15208798-15208704(-)
Potential amino acid sequence MAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQ
IAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNL
GLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE
TRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGRKEKIASGLLNP
FLAHLKVAQDQIAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLE
DAISIQSNDNLGLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEE
NSKVQLLRVLETRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRLMFDLVVIVNGR
KEKIASGLLNPFLAHLKVAQDQIAKGGYSITLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERV
TTIESEILQLEDAISIQSNDNLGLRSVEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTP
AVHDETTTHEENSKVQLLRVLETRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRL
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017