Detail information of BGIOSGA033203_circ_g.1


General Information
CircRNA Name BGIOSGA033203_circ_g.1
ID in PlantcircBase osi_circ_008565
Alias Chr10:20814854_20819105(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17827952-17832205  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033203
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033203_circ_g.2 BGIOSGA033203_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033203-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAGGTCAAAATTAAGCAATTGCGAGATCATGAACTTGATTTTCTGGTTGCCATATTGGGCTT
GCTTGTTAACCTTGTAGAGAAGGATAGCCTTAATAGgattggtgcaacaaattattgatgcaat
tttggttttgaacattgatgatcctccctgcactattggtgcagctgctcttctattcgttttg
gcaagtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGGTGCAACAAATTATTGATGCAATTTTGGTTTTGAACATTGATGATCCTCCCTGCACTAT
TGGTGCAGCTGCTCTTCTATTCGTTTTGGCAAGTGATGTGAGTACCTCTCAATCCCATCCTTGT
GCTTCTGTGCATGCTTCATTCTATTTTTTACGCATATCGATTGTTTTCTTTTATATAACAGCCC
ATAAAAATAATCACATCATGGCAAAGTTATTTATTTCTCCAGTACAGTTATATAAGTATTCACC
ACTTTTCCATGAATATCTTGGCATGTGATTACAAAGAAGATTATTTAAGAAAATCCATGCTTTT
ATTTCATCATTTTGTTTGAAGTTGAACTTTAATTTATGGTGTAAATTTCAGTTAATATTGCTAG
CAGCTCGTATTCTTTAATGGCATAACTTCACTTGTGCTTATTCTCCAATATCTCCCTTCTTGTT
GTTCAGGTTCAAGAAAATCATTTGTTGGATTCAGAATCTTGTGTCCATTTTCTTCTTAAATTAT
TAAATCCTCCAGTGAATCTTGTTGATTCCAAAGCACCATCGATAGGTTCCAAACTTCTTGGAAT
CAGTAAAGTTCAAATGCTTAATGGATCAAATAAGGATTCTGACTGCATTTCAGAGGAAATCCTT
TCAAAAGTTGAAGAGATTCTCTTAAGCTGTCAAGAGATCAAGTCGCTCGACAAAGATGACAAGA
AAACAACAAGGCCAGAACTGTGTCCAAAGTGGCTTGCTTTGTTGACAATGGAAAAGGCATGCTT
GTCTGCTGTTTCAGTGGAGGGTAAGTTTTAATCAAATTTCTTGGTCATGATTTCCCTTTATGAC
CATTATAATTATTTTTATGAGCCAAATAAGCAGTTGCCATAAGTTACATAGCACCTGTTTACAA
TATTCATGGGTGGTTTGCTTAGCCCTTTGCTTCACCTGCCTTTGATTGATGACTTCCATCCGTG
TTGCACAACTGAATTGGAGTAATTGACTGCACTAGAAGCACCTATGGCCATTGTCATACTAGGA
AGGTTTTCCCTTATCAAATATTTGATTGTTACAGAGACTTCTGACACTGTGTCCAGAGTCGGAG
GAAATTTTAAAGAGACATTAAGGGAGTTGGGCGGTCTTGATAGTATTTTTGACGTTATGATGGA
TTGCCATTCAACATTGGAGGTGAGATCTCGCTAACATCGCATATTTTACACTTCCTTTGTTCAA
CTCTAAAGGATGGTGCAAGTTTTGTTCCTTTTTGCCATTTTAGCTTTAATGTGCTTGAAGCCAC
ATGAAAGCAATGCTTGTCCAGATACATAGCCAAAGGTTGTTATATTTTGGGACATGGAAAATGC
TTGAGGTAGTAACTATTTTCATCAGGACATGGAAAATTGGCTGCATCACAAATTATGTTGTTTC
ATGTTGCAAAATAGTTTTTTAATACTTTTTTATTCTGCATGTGGTGTTAGTGTCTTACAGTGAT
TCCTCTGATGATTATATCCCCCACGATAATAATACTTGACATATCTACACCAAGTGGACATTAT
TCATTTGGATGTTACTTTTCCAGCTATACTTGCTGTTCTTGCATAAACTTTGGAGTAAATTGCG
TATCCCTTTAAGAGATAAACTGCTTGGTGCTCCTATCTGTGTACTTTTTATGCCCCCAACTAAT
AATGCAATCATATTACGCTGATAAACTGAATAAATAAATTAACAATATACTTCTGGTGGAAACC
TTGTGTATCAGAATCTCATAAAGGATACCTCAACTTCAGCTTTGGACCTAAATGAAGGAACATC
TTTGCAAAGTGCCGCTCTCCTCTTGAAATGTTTGAAAATATTGGAAAATGCCACATTTCTAAGC
GATGATAACAAGGTAATGTTCCTTATATATTCTGTTTCAGTTTAGTACCCATTTTCTTCTTCTG
TACCATCTTCTCCCCTCATTTGTTCTGTGCAAAATGTGCAAACAGTGTGACTTTGTATTTCTGC
TTAACATTTTTCTTTTTTTCCTGAAAAGCAGTATAAACTCTTACACTCATTTTGCTTCTTGCAG
ACCCATTTGCTTAATATGAGTAGAAAATTGTACCCGAAACGCTCCTCGCTTTCTTTTGTTGGTG
TCATTATCAGTATTATTGAGTTATTATCAGGTATTTTTCTTAATAATACAATATGTCCGCTAAC
ACAATAAAATGTTTTAAACATCCAGTATGTTAAAGTTGCAGTCTGACGCCTATTTTGTTTTGCT
GCAGCTCTTTCAATACTGCAGAATTCTTCTGTTGTTTCCAGCTCTACATATCCGAAATCGTCTA
AAGTCTCTCAACAGAGTTGCTCTGGTAATAACAAACACCAAATTTGTTTGATCAACTCGTTGGC
TTTTCTGTGCACTGTTTCAATATAGTTTGGTCGCCATTCAAGTCTCATTACAGATGTTGAACTT
GACCTGACACGGTGGCACCAATATTTATAAAACGCTACCTGATATTTTTAATATTTCATGTTTC
CTGACCCAGATTATCTTGTTGGTTCCTCATATAAGTTTAATTAGTGTCGTTCTTGAAACTTTGT
TATGCAGCAGATGTCATGGGGGGAACTTCATTTAATGATGGAAAGCGCAAGAACTCGAAGAAAA
AAAACCTTTTGTCGAACCAGACACGCCATAGTTGCTTATCTTCAAAATCAGAAGTTTCTCATAT
TACTATATCTTCTGGTAGTGATGCTGGTCTGTCACAGAAGGCATTCAATTGTTCTCCATCTATA
TCAAGCAATGGGGCATCAAGTGGTTCATTAGGCGAGAGACATAGCAATGGTGGTGCTTTGAAGT
TGAATATAAAAAAGGATCGTGGCAATGCAAATCCAATTAGAGGCTCAAGTGGGTGGATTTCAAT
AAGAGCGCACAGTTCTGATGGGAACTCCAGAGAAATGGCAAAAAGACGCCGTCTATCTGAAAAT
GTAATCACCGATAGTGGTGGCGGTGATGACCCTTTTGCTTTTGATGATGTTGATCAGGAGCCTT
CAAATTGGGAACTGCTTGGTCCAAAAAAGAAATCGCCTCAGAAACATCAAGACAAATCAGGAAA
TGGAGTGCTAGTTGCAAGTCATGAACCAGACCAACCTGAAGATCTTAATCAGTCGGGTACAACA
TCTCTTTTTAGTGCTAAAGATGAATCCAGTCTTTTGGAAGACTGCCTCTTGGCATCAGTTAAGG
TAATTAAATATGTTTCCTTCTGATCTTTCTTGTTTCTTCTTCAAGAGAATATACATTCTTGGGT
CACAGTTTCTCGGTTTGTCTTTGTGACTTTGTTGAGTGACATATTTTGAATTCACAAAATTTCC
TTTTCAATATGGCTCCTCAATCTATAGCATCTGTCGTGTATGTATTCTGTACAAAATAGTATTG
TAACATCTCCTAGAAGAAATTGGCACCATCCATATCATACAGTAGCAATTTATGAGACGTGATC
CTGATTGGAGGTTTAGGACAGAGCCTCGAGCTAAATTGCTATTGTATTGTATCTACTATCTTTT
AGTACATGATATGTGCTGGGCACTCTGTGTCTGAGTGTAGTGAGTGCTTAAGTTTACATAGTTC
AGCTAACATGCATATGTAAGACAGTTTATGATTAAATTTAAGTGTAGAAAGAAGGTACTTTCAA
AAGATTTTTAAGGACAATATAATTGTTTCACCGGGACTCATGCTTGTTCTGACTGTGAGCCTAA
TGTTACCTTTACATGCCCTTACATTGTCTATTTTTTATCGTTTTATGAGATCTTCCAAACAACT
TGATCTGTCTTAATGTTTTTTTGCTAGCTCCTTTCTTGGATATCTGGTAAATGGTTAGGCCGAA
GTATGAACTTTGCCTTATTGTTTCAAAGAAAATGTAACAACTCCTGGAAAAGTCTAATTTTGGT
TGCCCTTTATTTTGCTGACCGTATTGGCACACATCTAATTCTGCTGTTCCTTTCTGGCAGGTTC
TTATGAACTTAGCAAATGACAACCCATCTGGTTGTGAATTGATTGCGTCATGTGGTGGACTTAA
CACCATGGCCTCCTTGATCATGAAGCATTTCCCCTCATTTTGTTTTGTCGTGGACAACAACTAT
AACACGAGAGATGTCAATCTTGATCATGAGTTATCATCTTCTCAAAACAGCAAGGCACACCAGG
TCAAAATTAAGCAATTGCGAGATCATGAACTTGATTTTCTGGTTGCCATATTGGGCTTGCTTGT
TAACCTTGTAGAGAAGGATAGCCTTAATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021