Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G23900_circ_g.9 |
ID in PlantcircBase | ath_circ_004101 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 8444017-8445272 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G23900 |
Parent gene annotation |
AP-1 complex subunit gamma-1 |
Parent gene strand | + |
Alternative splicing | AT1G23900_circ_g.1 1_circ_ag.2 1_circ_ag.3 AT1G23900_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G23900_circ_g.7 AT1G23900_circ_g.8 AT1G23900_circ_g.10 AT1G23900_circ_g.11 AT1G23900_circ_g.12 AT1G23900_circ_g.13 1_circ_ag.14 1_circ_ag.15 AT1G23935_circ_g.1 AT1G23935_circ_g.2 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G23900.2:6 AT1G23900.3:6 AT1G23900.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.190477461 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8444033-8445269(+) |
Potential amino acid sequence |
MLMKAITFDDQAVQRHRVTILECVKDPDASIRKRALELVTLLVNENNVTQLTKELIDYLEISDE DFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHALIVVISNASELHGYTVRA LYKSVLTYSEQETLVRVAVWCIGEYGDLLVNNVGMLGIEDPITVTESDAVDVIEDAITRHNSDS TTKAMALVALLKLSSRFPSISEYVALNMLMKAITFDDQAVQRHRVTILECVKDPDASIRKRALE LVTLLVNENNVTQLTKELIDYLEISDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGK FVKDDVWHALIVVISNASELHGYTVRALYKSVLTYSEQETLVRVAVWCIGEYGDLLVNNVGMLG IEDPITVTESDAVDVIEDAITRHNSDSTTKAMALVALLKLSSRFPSISEYVALNMLMKAITFDD QAVQRHRVTILECVKDPDASIRKRALELVTLLVNENNVTQLTKELIDYLEISDEDFKEDLSAKI CFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHALIVVISNASELHGYTVRALYKSVLTYSE QETLVRVAVWCIGEYGDLLVNNVGMLGIEDPITVTESDAVDVIEDAITRHNSDSTTKAMALVAL LKLSSRFPSISEYVALNMLMKAITFDDQAVQRHRVTILECVKDPDASIRKRALELVTLLVNENN VTQLTKELIDYLEISDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHAL IVVISNASELHGYTVRALYKSVLTYSEQETLVRVAVWCIGEYGDLLVNNVGMLGIEDPITVTES DAVDVIEDAITRHNSDSTTKAMALVALLKLSSRFPSIS(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |