Detail information of AT2G11000_circ_g.3


General Information
CircRNA Name AT2G11000_circ_g.3
ID in PlantcircBase ath_circ_013153
Alias 2:4343862-4344809
Organism Arabidpsis thaliana
Position chr2: 4343862-4344809  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing AT2G11000_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.2:2
AT2G11000.1:2
AT2G11000.3:2
AT2G11000.4:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGAATCACAAACTCCAAGACGGCCTCTAAATCTGGTTCCAATGAAAATGCACAGATCTTATC
CAGATTGTGAAGAAGTTTCACATAATAGTCAATAGCctgattaagttgaagaatgtactcattc
gtatggaggccatggttcttggagacatctaatgcaagagatctggcgcaaattgtcaaaaagg
tatcacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATTAAGTTGAAGAATGTACTCATTCGTATGGAGGCCATGGTTCTTGGAGACATCTAATGCA
AGAGATCTGGCGCAAATTGTCAAAAAGGTATCACGGCCGTAAAGTTTCCCATCTTGCACAAGGA
GAAGCTGTAGAACAAGATTATTTATTGAGTATAAAAGGTAAAAGCATTTTGCTAGCTTAATACA
TAATTTATTCACAAATATTGCTAATATCATAACAAAAATGGACAACCATATCAATGCTTAACAG
AAATTTACAATCAGAATCAACCTCAACTACAAATATTGGATCTATATTCTTATAAGTCTTCATA
AGAAAGAAAAATGAGAGTGTCAGCCACTACATATTCCAGTGTCATCATAAATAATATCTAGATA
ACAATAATAGTAAAGAGTCAACAAGAAGAATAAGCAGAGCATTCAACAGGCCTGTTGGCGAAAT
GGGGCTTGAGGTGGTTCACGAGAGTTGGATATTCTCTAGTCCATTGGTTCTAAGTTTATGCAAC
TGTTCTTACAGAAATAAAGGAGATTTCTACTATAGTCATATGGCTGAATCACTCAACTCTAAGT
GACAATGAATTGAAAATGAGTGCTAATGAACACAAAACTGCAAAGCAAGGAAGCGGGTAAAAGA
AGAAGCCATATTATCCACTATACAAACACACCCTAGTGGATGTATGCGAACATCAGTGCAACTA
CAGCCAAAATAGTTACTCAAAACAAGAAAACAAAATGATAAATGGGTATCTGAAAGCACAGAGC
TGCATGATATTGATGCGTTAAGTTAAAGTAACGCACCTGAAGATGAGCCCTAGCAACCAAATCA
GGACGAGATTTTTGAAACTGAATCACAAACTCCAAGACGGCCTCTAAATCTGGTTCCAATGAAA
ATGCACAGATCTTATCCAGATTGTGAAGAAGTTTCACATAATAGTCAATAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.122839197
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020