Detail information of AT2G11000_circ_g.4


General Information
CircRNA Name AT2G11000_circ_g.4
ID in PlantcircBase ath_circ_013154
Alias Ath_circ_FC1184
Organism Arabidpsis thaliana
Position chr2: 4343862-4345169  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing AT2G11000_circ_g.3
Support reads 5
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.2:3
AT2G11000.4:3
AT2G11000.3:3
AT2G11000.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAATCTAGCTCTGATATGCAATAGCCTATATGTTTCCTTGCCAATTCGAGGCCACGTCCTTG
TGGTCGTCTCATACAATTAAGAGCATGTAGAAAATGctgattaagttgaagaatgtactcattc
gtatggaggccatggttcttggagacatctaatgcaagagatctggcgcaaattgtcaaaaagg
tatcacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATTAAGTTGAAGAATGTACTCATTCGTATGGAGGCCATGGTTCTTGGAGACATCTAATGCA
AGAGATCTGGCGCAAATTGTCAAAAAGGTATCACGGCCGTAAAGTTTCCCATCTTGCACAAGGA
GAAGCTGTAGAACAAGATTATTTATTGAGTATAAAAGGTAAAAGCATTTTGCTAGCTTAATACA
TAATTTATTCACAAATATTGCTAATATCATAACAAAAATGGACAACCATATCAATGCTTAACAG
AAATTTACAATCAGAATCAACCTCAACTACAAATATTGGATCTATATTCTTATAAGTCTTCATA
AGAAAGAAAAATGAGAGTGTCAGCCACTACATATTCCAGTGTCATCATAAATAATATCTAGATA
ACAATAATAGTAAAGAGTCAACAAGAAGAATAAGCAGAGCATTCAACAGGCCTGTTGGCGAAAT
GGGGCTTGAGGTGGTTCACGAGAGTTGGATATTCTCTAGTCCATTGGTTCTAAGTTTATGCAAC
TGTTCTTACAGAAATAAAGGAGATTTCTACTATAGTCATATGGCTGAATCACTCAACTCTAAGT
GACAATGAATTGAAAATGAGTGCTAATGAACACAAAACTGCAAAGCAAGGAAGCGGGTAAAAGA
AGAAGCCATATTATCCACTATACAAACACACCCTAGTGGATGTATGCGAACATCAGTGCAACTA
CAGCCAAAATAGTTACTCAAAACAAGAAAACAAAATGATAAATGGGTATCTGAAAGCACAGAGC
TGCATGATATTGATGCGTTAAGTTAAAGTAACGCACCTGAAGATGAGCCCTAGCAACCAAATCA
GGACGAGATTTTTGAAACTGAATCACAAACTCCAAGACGGCCTCTAAATCTGGTTCCAATGAAA
ATGCACAGATCTTATCCAGATTGTGAAGAAGTTTCACATAATAGTCAATAGCCTGGAGAATCAA
AAATTGAAAAAAGTTACTAAAAAGTTATATACACACAAACTAAATTACGTATACAGAGAATTTA
GAAGTCCCAACCTTTTTCCAAGAAAGAAGTTTAATGGCACGTGGCGGCGTTGGAGCTGATAATC
TTTTGTTTAAAGTAGGATCAAATCCAATGGGGGACCGACCAGAAGCAGTTGTACTTTCTTCTAT
CTCGTTTACGCCATTCTCGAAAATATCTAATCTTAGAAATTCTGCTGAATCCAGAACAGAATCT
AGCTCTGATATGCAATAGCCTATATGTTTCCTTGCCAATTCGAGGCCACGTCCTTGTGGTCGTC
TCATACAATTAAGAGCATGTAGAAAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.128790762
Functional Information
Coding potential Y
Potential coding position 4345146-4343864(-)
Potential amino acid sequence MRRPQGRGLELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLN
KRLSAPTPPRAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARA
HLQLLLVQDGKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQHFLHALNCMRRPQGRGL
ELARKHIGYCISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPP
RAIKLLSWKKAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQD
GKLYGRDTFLTICARSLALDVSKNHGLHTNEYILQLNQHFLHALNCMRRPQGRGLELARKHIGY
CISELDSVLDSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWK
KAIDYYVKLLHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTF
LTICARSLALDVSKNHGLHTNEYILQLNQHFLHALNCMRRPQGRGLELARKHIGYCISELDSVL
DSAEFLRLDIFENGVNEIEESTTASGRSPIGFDPTLNKRLSAPTPPRAIKLLSWKKAIDYYVKL
LHNLDKICAFSLEPDLEAVLEFVIQFQKSRPDLVARAHLQLLLVQDGKLYGRDTFLTICARSLA
LDVSKNHGLHTNEYILQLNQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a