Detail information of BGIOSGA021124_circ_ag.3


General Information
CircRNA Name BGIOSGA021124_circ_ag.3
ID in PlantcircBase osi_circ_016272
Alias Chr06:20042701_20047358(MH63RS2), Chr06:20310604_20315264(ZS97RS2), Chr06:20042701_20047358(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 20260245-20264905  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021124_circ_ag.1 BGIOSGA021124_circ_ag.2 BGIOSGA021123_circ_igg.1 BGIOSGA021123_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTATAGCAAGCTTTGTGTCTCTAAGGAGCTCAGGGTGATTCACAAGGTTTTCAAACAAATGTT
CCTTAAGATATTCAGCAGCAAGTGATCCTCCATGACccatcaaatacaccaaataagctgactg
tttctccgttgaccgtggttgactttatgctcaagcgatcctccatagaaggcctcctcccctg
gaaacttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCAAATACACCAAATAAGCTGACTGTTTCTCCGTTGACCGTGGTTGACTTTATGCTCAAGC
GATCCTCCATAGAAGGCCTCCTCCCCTGGAAACTTGAATATCCCCAGCTCAATTTACCATCCTT
ACTGCCAAAAAAAAAAGTATTTGATATCATGTCCTCTCAATTCTCAAATCTCTAATAGAAGGAT
TATAAGTAGAGAAATTCGAAGGAATTCTGAAATTGCACAGATAAGCCAATTTCAACTGGGCAGC
AGGTAAAATACACACCTACAGCCAACTCCATCGCCGTCAAATCTCGACCTCGGCGGCTGCCGCT
TCGAGTTCCGCCCCCTCCGGCCTCCCCTCGAGGCAGCCGGTCCGCGTGAGGATGCCTCGCCTTC
GTCGCCGATGCTGACGCCGAGGAGGAGCGAGTAGAGCTCGACCTCGTCGTCGCCCAGGCCCTTC
GAAGCAGCTCCGGCGCCGCCGCGCGAGGAGAAGAAGCGGGGGGCGGAGCCGCCATTCCGCAGCG
GGCCAGGGGCATGGAGACTGGGGTGTGGGCCCGCGCGGCTGGAGGCGGCGGACGTCGACGAAGC
CGCGGCGCGGCGGAGGAGGCCGAGGAGGTGGTGGCGCCGCATGGCGGAGGCGGAGGCGGAGGCG
GAGACAGCGGCCCTGGGTTTAGGTTTTTAACGATTTTTCTTTTTGCAACCGCTAAACAACTGTC
GCAAAAGTTCCCTTCAAAAATTTTTTTTTGGGAGTTTTAGAACTTTTTTTTAAAAAAAATTAAA
AATATAACTATTATGAAACATATTTTATTGTGGACGATGTTTCCTACTAAGACAATGGACACTC
TCAACGAATGGATCCTCCACGTGCTACACTAGTCATATATCAAAGTTCTTCCGTGCGTCTTTAT
CATGGCGGTAGAGACTTTTTTGTTTTTGGTTGGACGATTCCATAAATAGAATAAAAAGATAAAT
AAGATCAAGTAGAACCAGTAAGTATGAGTGGAAAACTTACTATAGAAAGAAGCTTACGCCAGAA
GAAACCAAAAGATATCTTATCACGGAAGGAAGCTTGCAGCGTAAGCCAGCAACTTGTAGTGGAA
GCCAAAAGTTAGCTTTTAGGAGAACCCAGCTTACACTGTAAATCATCAGCTTTCTCCGCCTATA
AATAGGACCCTCAAGGTTAAGGCGAGATAGATCTCTTTGGAGCACCTCGACTCTCCTTATGTAG
ATTGTAATCAATTTCAAAAGAAATAAGGCTTTCACTCGCTTATAATTTCTGTGGTCTACAGCTC
TGTGTTCATCTGTTTGCGTGCTGATCAGTAGAATAAAAACTACAGTTATGGTGTTTACTATAAT
ATAATTATACAACATATATTTTAATTAAATTGTAACTAAATTGTAGTTATAATATAATTACCCT
ACAACTATATTTTAATTATATTTTCCCCTCTGTATAACTTAGGTATAAAGCTACATATATTTTT
TTATACAACTTATCTTATTATAATATATAGTTATGGTGAAATTACATCATACTATAGTTAGATT
TGATTTTTTTTCACTCAAAAAACTTGTGGTAGTTTTTAGATAGTCCTTTTTTGATTTTTTTTTA
ATAAATCATTTTGGATATTTTGCATTATCATATCGTTGAAGCAAAGTTCAAAACAAAAGAAAGA
GTCTTGATTTAGAGCAGCTTAAATTGCTTGGGCAGTGTAAGCCGTTACGAACATACTTACCATT
AAAAAAAGTAAAACCCGTAAAAACCAGACCTAGAAGTTCTCTAAATTAATAAAAAAATTAATTT
AATAAAAAAAATACTACAGAGATCAGTATAATATGAAATAATTCCCACCAAATCTTAAGTCTAA
GCTCAACTTTATTCTAAAGAATAAAAAATCAGGTTAATAGTATAAGTTTGAGGTTTGGTGAGAA
TGTATTCATATCAATACCTATCTCTAGTATTTTTTCATGAAATTATAAAACTTTTTATGTTCAA
CTTTCACGTGTTTTCACAGGACATATACCCTACTTACATAAGCAGAAGTGCAAAAGAGATAATT
TTTTTCTTTTCAAAATAAATATTGATTTTTCCTTTCAAAATAAATATTGATTTTTTTCCTTTCA
AAATAAAGGTTCTTCATGTGAAACATGAGTTTTGAAGAAGAAAGAGCTTCGCAATCGTGATTAT
AAGCTTGCGATGCTTGCTGCTGCTGCTAGCAAATAGGCATGAAAAATCGAAAACGATATTATTT
TTTATTAGTTTTTAAAAAAGGTAACGGTCAGGAATTTAGTTTTTATATTAATAAAATTAAATAT
TTAGTGATAATTTTAATATGACGTATAGAGAAATTAAAAAAAAATTACAGAAGAAATAATATTA
TTTTTTTTGCAAAAATGATATTGGTATGATAGAAAAAATTATATACGGTTTTCATCCCTATTAG
CGACGCCGGGATTTGGCAAACAATAACTAATGAAGTATATAGGCACAGACATTAAATCATTAGC
CACCTAAAAAATTTAGAACATTTCTTATGCTATAGATAACTTAATATTTCAGGGCCGGCTACCC
CTAATAGCAAGAGATCCGAAACCGAAATCAAACAACCATAAGACGTTTCGCTAGTAAACTGTGC
ACGTCAGATTTAAAAGCTTCCTACATGACGAAAAAAACGACTCAACCAATCTAGTAATAATCTT
GTAGAACCGCGGATCAGGGGACCAACTCTCGTTTCAAGATATCTGGTGACAAAACTTTGTTAAC
ATCAGTTGCTGTTGGTTGATTTTCCATGGTGAAACTGCAGCACGATGCATGTGATGTTGTCTAA
GGTAAGCCGAGAGTGGGCGACTTCTGTCAGCTTCATGGCTGCCGCTTTGGGTCCATCTTGCGCT
TTCAAAAGAGAAACAGCATCCTTGTTGACAAAAGATGGAAAATGCTAGTTAGCATTGGACCGAA
TGAGATACGCGCTCGCACGAGGGCAAAGCTGTGTGTCAGGGGTGAACATAGTGGATGTCATTCA
TTGGTTTTCATGTAAGCAGATATTTCTGCTGTTTTTTTCTAGGTCGCATAATCAACAAACAGGG
ATTCAACAAATGATACCTCATTTCGCATAACATCCCAAAGGCCATCAGTAGCAAGAATCAGGTA
TTCCAAGCTTTCATCGACCACTTTGTCCTGCATATTTACAGTAAAACATCACAAAAGATTCATA
GGTGATGTTCAATAGGCTTTTCCATTAACAGGTTTTGTGGCATATAAGGAATCAGTGCGTGAAC
AATTAAGTAGAAGGATAGGATCATATGCAAAGGAGGAACATGTAGCAGGAGAATTTGAAATGCT
GAATTACATGGGTTTTCTCATGACCAATCAGGAACATCGACATTCCCAGATCACAGGTGAGATT
AAAGTGATCAATCAGGAACATCAACATTTCCCAGATAGACTGCACTTGCAGGCTGTTTAGCATT
GCAGCAGATCCATTTCATTCAGGTTGATGATGTGTACAGACTATTTCATGATACCCAAGTGCAT
ATGAAATGGGTATTATGGTTTAGTAAGACAAAACCAGTACAGAAAAGCTGGTCCTTGTCCACAT
AAAAATGTAAACATGCAAGGGGCGGGGATCCAGTGCAAAAAACTAAACTTTAAAAAGATACCTG
AATATCTGGTTCTGCTTTCACATAGTGCTTCAATGCACGGTTGCCAAATGCACGGGACATTGCC
AAAAGTCCATTAACCCTCCATGTATCTGCTTCGACATGATCAAACTTCTCAAGTTTTCATTCAT
ACTTCCTATTAGATTAAGCTAAAGCTGGCCAAATACATCAGGAGGATTTTCATGATTAAAGGGC
TTACCATCGAAAACAACAATACCTCCGGCATCCTCAATTCTCTTCTGCTCATCTTTTCTGTTAG
GTTTATGATCTTCTGACAGTGGGACAGCTAAAAAAGCATGGAAAGAAACGAGATTTTAACGGAA
AAACAAACAAGAGAATAAATGTCATTTCACAGTTTCTAGATTATTTGGCATGCTGTAACTTATT
AAAGTGGTATATAGCAACATATCAAAAGTTAGTGCTCAATTCCTCAGTGTCATTGATAAAATCT
ACATGTGACATAATCCTTTGTAACTCAGGAAAAATAGAAATAGTCATTTGAAAGTTAGAATCCG
GTAGTGCGTCATATTTTGATATTTTTCAGTTGACAGAAAGGTTTCAGGGCATACTGGATAGCAA
CCGTTTATAGTTATATGGAAATCTGAAGTGAAGTGTCATCACTAACAAAGAAACACAACCAATC
AAATATTACCTTTGCCAGCTTTTAGAGCGACAACACGTGAATCACCAACATTACCAACATATAG
GTGGTTGCCAACCAAAATAGCAGTCACAGCTGTTGAACCATCATCCCTAAAAGGATTAGAAGAC
ACTGACTCTAGGAAATCAGCATCAGTTTTCAGGAACGTTTGGCCTGTATTTTGCAAAAGCATTC
AAGAAAATGATAACATCAGTACTGTAGCACTGGACCTGAATGTTCGGAAGAAGTACAGCTGGAG
CAAGAGGGAGAACATTACTTATAGCAAGCTTTGTGTCTCTAAGGAGCTCAGGGTGATTCACAAG
GTTTTCAAACAAATGTTCCTTAAGATATTCAGCAGCAAGTGATCCTCCATGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021