Detail information of BGIOSGA014757_circ_g.3


General Information
CircRNA Name BGIOSGA014757_circ_g.3
ID in PlantcircBase osi_circ_014550
Alias Chr04:25914518_25915907(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23986816-23988205  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014757_circ_g.4 BGIOSGA014757_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA014757-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGTATAACCCACCAACTACAGGCATTGGATCAGGGAACTCAACATCATGGTCTACTTCAGCA
AGACCAAATACATAAGGACTACCAGGATGTGCATGGccttgcataacagttcttcaataggatt
accatcaaaccactcaaaagattttccactgcactctccccacaatagcccaccttcgccaaat
tctcccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGCATAACAGTTCTTCAATAGGATTACCATCAAACCACTCAAAAGATTTTCCACTGCACTC
TCCCCACAATAGCCCACCTTCGCCAAATTCTCCCCAGCGTGATGTGCCTAAACCATAAGAAATT
TGACAGGAAGGATCATAAATAAATAGGTACATTCAAACCATAGATAGCTACAACTACATTCGTC
ATATGCATATTATCTTAATGGCACGAATCATATTACTCCACAAAAATTTCAATCTCAAGTTTCT
TCCATCGTACATATGAGTGATGCAGCATTCATATAAAAAAACTAATGCATCAGTAAATGTAGAG
AAAGGAGTGAGCACCACGAGCTTTAAAATTGTTGTTCAAGTACAAATGCATGAAACACGATACC
AGTGTAACACCTTCAAATTTGGACAATTTTAATGGTACGATCCAAAATGAACAGAAAATCATGT
TAATAGCATAATTTGGAACTTTATATCTCCTAGTTCCATAATTACTGTATCCTTGATTCCAGAT
CAAACACAATAAATAAATGAGAAAACAATTGCTCTGAAATATAAACCCAAACCTGAAGAATTGT
TCCTCAAAGAACTATGAAGGTATAGATGATGATAACGGCATATGCGAAGCTTAGTAACAACTGC
TTCCTCTGTTAAGCCCTCCTCAGCTGAATATGTTTTCATTGTCTCTAGCACAGAAATCAGGCAA
TAGCCTTTTGCAGATCGTGAAATCCCTATCAATATAAATTTCATGGTGTATGAAAATGTCAGTG
CTGGAATCAGTACATGGTGGCCTAATGAAACCATCATATAAACAGGGAATAGAAATAAAGCACG
AACAGAAATGAAATACATTTTAAAACTTACAAAAAAGCATAACATAATGCCTCAAACACAAAAA
AAGTTCTTTGCGCCTTGAACAACACTCATAGGTCTATACACCATGATTTATTACTTGTACTCAT
TAAATTTTGGGGGAAAAATATGCTATAAAATCTTTGTCAAGATTCATGAGTAGTAATTATGACA
TTTTTCAATGAAAGATATAAACAGTTCATAAAAGTATTGTTCAATAAAAGAAAATAACATTCCA
TATAACCTAATGGACTATACCATTACCAATCAATTTCCACGCTCGATTTTGATTTACTAGCACA
CTCTCAACATGAAATTAATCCTACAAAGTTACATATGAAATTTTATGGAGCAAACATATAACTA
GCTAACAAGCAGCATAGTTACGATGGAAGAGATAACACAGAGATATTTAACTTGATTTATGGAG
TAGAAATCTAGAAGTATAACCCACCAACTACAGGCATTGGATCAGGGAACTCAACATCATGGTC
TACTTCAGCAAGACCAAATACATAAGGACTACCAGGATGTGCATGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021