Detail information of BGIOSGA014757_circ_g.5


General Information
CircRNA Name BGIOSGA014757_circ_g.5
ID in PlantcircBase osi_circ_014552
Alias Chr04:25892940_25896934(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23987379-23989808  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014757
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014757_circ_g.3 BGIOSGA014757_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TC-AA
Number of exons covered BGIOSGA014757-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCACGCGCGCCATCGGCCGCTGCCACCACCTCCGCGCGCGCCCGCGGCCGCCTCCGCCTCG
CCCGCCGCCGCCGCCGTCTCCGCCTCGCCCGCGGCCcctgaagaattgttcctcaaagaactat
gaaggtatagatgatgataacggcatatgcgaagcttagtaacaactgcttcctctgttaagcc
ctcctcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAGAATTGTTCCTCAAAGAACTATGAAGGTATAGATGATGATAACGGCATATGCGAAGCT
TAGTAACAACTGCTTCCTCTGTTAAGCCCTCCTCAGCTGAATATGTTTTCATTGTCTCTAGCAC
AGAAATCAGGCAATAGCCTTTTGCAGATCGTGAAATCCCTATCAATATAAATTTCATGGTGTAT
GAAAATGTCAGTGCTGGAATCAGTACATGGTGGCCTAATGAAACCATCATATAAACAGGGAATA
GAAATAAAGCACGAACAGAAATGAAATACATTTTAAAACTTACAAAAAAGCATAACATAATGCC
TCAAACACAAAAAAAGTTCTTTGCGCCTTGAACAACACTCATAGGTCTATACACCATGATTTAT
TACTTGTACTCATTAAATTTTGGGGGAAAAATATGCTATAAAATCTTTGTCAAGATTCATGAGT
AGTAATTATGACATTTTTCAATGAAAGATATAAACAGTTCATAAAAGTATTGTTCAATAAAAGA
AAATAACATTCCATATAACCTAATGGACTATACCATTACCAATCAATTTCCACGCTCGATTTTG
ATTTACTAGCACACTCTCAACATGAAATTAATCCTACAAAGTTACATATGAAATTTTATGGAGC
AAACATATAACTAGCTAACAAGCAGCATAGTTACGATGGAAGAGATAACACAGAGATATTTAAC
TTGATTTATGGAGTAGAAATCTAGAAGTATAACCCACCAACTACAGGCATTGGATCAGGGAACT
CAACATCATGGTCTACTTCAGCAAGACCAAATACATAAGGACTACCAGGATGTGCATGGCTGTA
ACAGAAACAGAGGTACATGGTTACGGACATAAGTAATTGTAAAACTTAAAATGTAAAAAGCATT
ATAGAACTTCCTACTATTAAGATCTAGATGCACCTCCAGTAACATTGAAACAGGCTTAAGGACG
ATAAATACTATGAGTACCACTATATTTTGTCAAAAGATCACCCATCACTAATAAATAATAAAAT
TATAAGTTAAACTTCCACGATAAATAGTCACACAATTACCCAGAAATAAATCGGCCTTTCCTAG
CACGAGCTTGGGTTGGGCCTTGAATTTCTTCAACTATGCACTGCAAGCAGTAGTAAAAAATAAC
AATATGCACAAAGGGTCAGCTTCAAGAAGATGACCAATTAAATGTAACCAGAGATGCCAAATTG
GTGGGAAATTAATGATCAAATATGTCACGGTTGATAAAAGCATGGTCAAGTACTGCTCATAATT
GAACAGGTTGTGAAATGTGAGCATTGCATCTCTACAGAATAAACTGAGCAAAATCCACAACTGT
TTAGTTCTATGATCACTCCAGCACTAACGCAAAAAAAGTTGGTTTCAAAATTTCTTGGTGTGAA
ATCATGTGGTGATCTCATGTATAAGATCTCATCTTGATACACCTCTCTCCAGAGACTTATGTCA
GGCCCAATCAATTGTTCAGCATGAGGACACTGGTAAATAACATAAATAAAAAAGTAATAACATC
CTTGAACTGTCCTGTAAACAGTTAATTAACTTTTTACTCTAAGGCTTGATGAGAGGATAAAAAT
TACAAACCAAAGTACTCATTACGGCTCCAAATAAGCACTGACATTTCATGTAGATCATTGAACT
TATGGCTTACTGGAACAGTGACTTTAGACCTTATAGTTGAAGTTGTATTTCTACAACTACCAAG
GTTCTAAAAAGTGATATCAGATTCCATGGGATCACCCCACCTTGTAGCACTTATGGGAAAATCA
GCCGCTTATGCAGCTTGACCGGTACAAGGTTGGGGCACATGTTCCTTACATGCAGAATTGTGGT
TCTTTTGTCAAGAACACTGAAAATTACATTGCACAAAGGGGCAATTGCATCCATGCCCCCACTT
TCGAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCCACTTTTTGAA
TCTGAATCAGCCATGTACCCCCACTTTTAACAGCCGGTTTTAACAGTGTTAGTGGTAGAAAAAA
GGACATTTATACCCTTGGTGGTTATTGCATTTTTGCCCCCATTTTATTTTATTTCAGCTGTGCG
ATTTTGCCCCTATTTTGTGCATTTCAGCTTGTGTGATGAGCATTTGGACCAAATATGAGCATCT
ACTAGGCAATAACAAAATTTGACCAAAGTTTGAATAAAATTTTAACAGCATTTACAAAATTTGA
CGAAAAAGTGGCCGCCGGCAGGCCCTCGACGCGGCCGCGGCCCACGGCCACCGTAGCCGCCTCC
GCGTGCGCCCACCGCCGCCGTCGCCGCCTCCACGCGCGCCATCGGCCGCTGCCACCACCTCCGC
GCGCGCCCGCGGCCGCCTCCGCCTCGCCCGCCGCCGCCGCCGTCTCCGCCTCGCCCGCGGCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021