Detail information of Os03g0719100_circ_g.2


General Information
CircRNA Name Os03g0719100_circ_g.2
ID in PlantcircBase osa_circ_021314
Alias NA
Organism Oryza sativa
Position chr3: 29128188-29131791  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0719100
Parent gene annotation SUMO (small ubiquitin-related modifier) E3-ligase, Abiotic stres
s response, Stress adaptation (Os03t0719100-01)
Parent gene strand +
Alternative splicing Os03g0719100_circ_g.1 Os03g0719100_circ_g.3 Os03g0719100_circ_g.4 Os03g0719100_circ_g.5 Os03g0719100_circ_g.6 Os03g0719100_circ_g.7 Os03g0719100_circ_g.8 Os03g0719100_circ_g.9 Os03g0719100_circ_g.10
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0719100-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGTGAGAGAAGGGTCTAATAAGATTGTCCTATCTAGAAGTGACTCTCGCACATTCTGTTTG
GGAGTCAGGATTGCCAAGAGGAGATCTGTAGAACAGtacaagttgaatcactttagaataaaag
agctaaaggatgtcctgcatcagcttggacttccaaagcaaggaaggaaacaggtttgttcact
gcatcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACAAGTTGAATCACTTTAGAATAAAAGAGCTAAAGGATGTCCTGCATCAGCTTGGACTTCCAA
AGCAAGGAAGGAAACAGGTTTGTTCACTGCATCTTCCTTCATCTTTTTCATTACACAATTACTT
TCTAGTCATCGCTTAATTAACACCAATGGCGCTAGTTACCATTCTTCCTTTTCCTTTTCTTAAC
TACGTAAAATCGCTCCCTCTCTTAAAAGAACTTCCTAAAAAAACTGGTCCACCCTTAAAAAGAC
ATCGTCTAAAAAAAAATCTGGTGATCCTGTAATCCCGTTACCATGTATGGACATGTAACTAGTA
TTGTGGGAAAATGTGAGATTCAGTTGGGTTTAATGGCCTCCATGGCAATAGCCCAGACATATTT
TGCAATTAAATTAACTTGTATGTGACTTCTAGTATTGCACATATGGGATTTGTTCACTTATGGA
CCATTTGGGTCTTGTGCTTTCGCTTCATTTACAGGAACTTGTGGACAAAATTATAGCAGTATTG
TCTGATCAACAAGAACAAGGTACATTACACTGTTGCTTTTGAAATTTTGATATTTTTTACTGGT
GTCGACTACTAAAAGGTCATGATTTCATTTTGTTCTTGCAGACTCCAGATTGAATGGCTTGCCA
AACAAAAAGATGGTTGGGAAAGAAACTGTGGCTAAAATAGTTGATGACACTTTTGCGTGAGCTT
ACTTTCTTTATATACCTTTTTCAATGATCCAATTAGCTATTTACAAGGCATTATAAACTTTGTG
TACTGCTTCCAGAAAAATGAATGGCTCCACAAATGCTGTTCCAGCCTCTAGAAATCAGACTGAC
TCGGGGCACATTGTAAAGCCTAAAAGGAAGTCAGATGATTCTGCTCAGTTGGATGTCAAAGTCC
GTTGTCCCTGTGGTTATTCCATGGCCAATGATTCCATGATTAAGGTACTGTTCAGAAATTCATA
TTACAGTTACAAGTATAATCATGCAATATCTAATTGTCCTCCACCAGCCAATCCAACAGAACCT
GTAAAATTTCTTCTAAACCTTGTACTGATCATGCTGAATTATTTGGGTTACTATTCATTTATGA
TTTATCCATCATGAGTCTTATGTGCTGAAACTTGAATACAGCTAATTGTTTTGGGTTACACATT
TATTCATCGTGAGTCTTATGTAAAACAGAAATGTTATACCAAATGTAGCACCTAAGTGTTGTGT
TATTTCATTATTTCAAAAATTGGTAGCATCTCGTAATCTTTTTCGTGACAGTTCCTGTTGCTTG
CTTCTGTTTAGTGTTATTATCCACAATTTGTTTGCCCCTTTTCAGTGTGAAGGTCCACAATGCA
ATACACAGCAACATGTAGGCTGCGTTATCATATCTGAGAAGCCTGCAGACAGTGTTCCTCCAGA
ATTACCACCACACTTTTATTGTGATATGTGCCGAATCACTCGAGCTGACCCGTAAGTTCTTCTA
TACTCTCTGATGTAGCAACTCATCCTTACTGAACCACCCAATTGTCCTGCGATCACATGCTTAA
TTTCTTCCTTGTGCCATAATGATGTGGTATATCAAGTTCTTCATGGTAGTTCAAGCTCAAACAT
CTTATTCTTTTAGTTCTGTGGCATTATTTATTTATTTATTTATAGAACTATTTTTTTTCTGAGC
AAAACCATTTTTTCTGTGAACTTTAAAACTCTATGATTTCTCTTTATTCCCGTTATGTGCGTTT
TCTTGTACGACATTGTTAGGCTGAGTACATAATTTACCAAATTCCTATTTGGTCTTGATATCAT
AGCATATTGTTCTAACATGATTTCCTTCTTTAACTTGCAGTTTCTGGGTTACTGTTAATCATCC
TGTACTTCCAGTCTCAATAACTCCCTGTAAAGTAGCATCTGATGGGTGAGTTATCTATTATTTT
GTCACCAAAGAACATTATTTAATGTTGGTTCCCAAAATGTTGGTATTGTCACATGTGGAATAGA
AGGGTCGATCTGGGGGCAAGTGGGCAGGATGGATCCTACATTGTTCTCCACTTCCTTTTTTCCC
CTCTTTTTTGTTTGTGATTCATGCTTATGTCCAGGTCATATGCTGTACAGTATTTCGAGAAGAC
CTTTCCGCTATCAAGAGCTAATTGGGAGATGCTTCAGAAAGATGAATATGACCTCCAGGTTAAC
TCCCTGTTCCAATGAACCATCATTAATTTTGTTCACGATGACCATTCCTAATCATTTTGAGCCA
TAACTTATTAAGATCTGTAAAATCGAACCTTTGCAAAGACATCTCAGTATAGAGTATAAACTAT
GGTTATTATGCTTTCTTATTGATTTTATGCTAGAGAATATTTGAGTTGTTTGACCAATATGTAT
CCAATTATGGCCTTGATTTTCTGTTGCATTCTTTATTTTCATGCAGGTTTGGTGTATCCTATTC
AATGATAGCGTACCTTTCAGGATGCAGTGGCCTTTACATTCTGATATTCAAATTAATGGTATAT
GCCTGAGTTTTCTGTGCAGCAATGCATATTCTATAACAGGGTTAATAGAAAACGGTTTATTCAG
TTAAAGAATCATGTCCTCAAACTCATTGCAAATGGTATATGCCTGAGCTTACTGTACGTAACAA
TGTATATTCTATAATAGGGTTCATAGAGAACGGTTTATTCAGTTAGAGAATCACGTCCTCAAAC
TCATTGCACTAGTTTTGTTTGTATAATCCATGCTAGACTAACAGAACAGTGTCGTGGAACATAC
ATTGTTTAATACGCTGCTTTGTTATCAGCAGTTCTTTTACAGCTTGTTGAATTTTTGGACGGTG
TGTTTTCTGCCTTGAACTTGGTTGAAGGGCCTCATAATCTCTTGGCTAATCAGTGTTTGCTGTT
AGGATGTCTTGAGCTTATGTTTTCTGTGGTACAATTGAGCCTATTTGCCCAAGCTAGGTGGATG
ATGGTGCCTGTTACTGCATTAAAAACCAAACTTCATCTTCAGCTCATATTTTGTTGCATTACCA
GTTGTTTTGCTCCTCGTTTTACTTTATTGTGGGTGATTTGTGCATGCACATCTTTTTGCATCTA
TGTTTTCATGCACTTGCATATTCCTTTATTTCGGCAATTTAGAAATGTAGCACCTTGCAAGTTT
ACATCCTTTTAGCTATATCTGATCTCTTGTCACTTCATACGTTATCTTAAACATGCCGTGATAA
ATGGTCATCTGTACCGAATAGTAGTTGAAATGTTCAATCATAAATCTGAACTGTTCATGTTGGC
AATTGGTTTTCTTTTCTTCAGGTATTCCTATTAGGGTTGTCAACAGGCAACCCACACAACAGTT
AGGGGTGAATGGTAGAGACGATGGTCCAGTTGTAAGCATCTTATTCTCATAAAGCATGCTATTC
TCTTATTCAATTATTCATCTGAGATATTATATACATCATCTCTGTCAACTACTAGCTATTCTGT
TTGGATATTTAATCCTCCCTGCCCATTTTTCTGTATCCAGTTAACAGCATATGTGAGAGAAGGG
TCTAATAAGATTGTCCTATCTAGAAGTGACTCTCGCACATTCTGTTTGGGAGTCAGGATTGCCA
AGAGGAGATCTGTAGAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.09764329
Functional Information
Coding potential Y
Potential coding position 29128838-29131788(+)
Potential amino acid sequence MVGKETVAKIVDDTFAKMNGSTNAVPASRNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMAN
DSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSI
TPCKVASDGSYAVQYFEKTFPLSRANWEMLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQING
IPIRVVNRQPTQQLGVNGRDDGPVLTAYVREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLN
HFRIKELKDVLHQLGLPKQGRKQELVDKIIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDT
FAKMNGSTNAVPASRNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQ
QHVGCVIISEKPADSVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQ
YFEKTFPLSRANWEMLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQL
GVNGRDDGPVLTAYVREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLNHFRIKELKDVLHQL
GLPKQGRKQELVDKIIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDTFAKMNGSTNAVPAS
RNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQQHVGCVIISEKPAD
SVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWE
MLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQLGVNGRDDGPVLTAY
VREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLNHFRIKELKDVLHQLGLPKQGRKQELVDK
IIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDTFAKMNGSTNAVPASRNQTDSGHIVKPKR
KSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDM
CRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWEMLQKDEYDLQVWCI
LFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQLGVNGRDDGPVLTAYVREGSNKIVLSRSD
SRTFCLGVRIAKRRSVEQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017