Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0719100_circ_g.2 |
ID in PlantcircBase | osa_circ_021314 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 29128188-29131791 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0719100 |
Parent gene annotation |
SUMO (small ubiquitin-related modifier) E3-ligase, Abiotic stres s response, Stress adaptation (Os03t0719100-01) |
Parent gene strand | + |
Alternative splicing | Os03g0719100_circ_g.1 Os03g0719100_circ_g.3 Os03g0719100_circ_g.4 Os03g0719100_circ_g.5 Os03g0719100_circ_g.6 Os03g0719100_circ_g.7 Os03g0719100_circ_g.8 Os03g0719100_circ_g.9 Os03g0719100_circ_g.10 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0719100-01:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.09764329 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29128838-29131788(+) |
Potential amino acid sequence |
MVGKETVAKIVDDTFAKMNGSTNAVPASRNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMAN DSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSI TPCKVASDGSYAVQYFEKTFPLSRANWEMLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQING IPIRVVNRQPTQQLGVNGRDDGPVLTAYVREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLN HFRIKELKDVLHQLGLPKQGRKQELVDKIIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDT FAKMNGSTNAVPASRNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQ QHVGCVIISEKPADSVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQ YFEKTFPLSRANWEMLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQL GVNGRDDGPVLTAYVREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLNHFRIKELKDVLHQL GLPKQGRKQELVDKIIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDTFAKMNGSTNAVPAS RNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQQHVGCVIISEKPAD SVPPELPPHFYCDMCRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWE MLQKDEYDLQVWCILFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQLGVNGRDDGPVLTAY VREGSNKIVLSRSDSRTFCLGVRIAKRRSVEQYKLNHFRIKELKDVLHQLGLPKQGRKQELVDK IIAVLSDQQEQDSRLNGLPNKKMVGKETVAKIVDDTFAKMNGSTNAVPASRNQTDSGHIVKPKR KSDDSAQLDVKVRCPCGYSMANDSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDM CRITRADPFWVTVNHPVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWEMLQKDEYDLQVWCI LFNDSVPFRMQWPLHSDIQINGIPIRVVNRQPTQQLGVNGRDDGPVLTAYVREGSNKIVLSRSD SRTFCLGVRIAKRRSVEQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |