Plant Circular RNA Database

Detail information of Os05g0150300_circ_g.13

			
						 General Information
					
						CircRNA Name
						Os05g0150300_circ_g.13
					
						ID in PlantcircBase
						osa_circ_026605
					
						Alias
						Os_ciR10148
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2881938-2883149  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os05g0150300						
					
						Parent gene annotation
						
							Similar to Possible global transcription activator SNF2L1 (SWI/S
NF related matrix associated actin dependent regulator of chroma
tin subfamily A member 1). (Os05t0150300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0150300_circ_g.9 Os05g0150300_circ_g.10 Os05g0150300_circ_g.11 Os05g0150300_circ_g.12 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0150300-01:6

General Information
CircRNA Name	Os05g0150300_circ_g.13
ID in PlantcircBase	osa_circ_026605
Alias	Os_ciR10148
Organism	Oryza sativa
Position	chr5: 2881938-2883149 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os05g0150300
Parent gene annotation	Similar to Possible global transcription activator SNF2L1 (SWI/S NF related matrix associated actin dependent regulator of chroma tin subfamily A member 1). (Os05t0150300-01)
Parent gene strand	+
Alternative splicing	Os05g0150300_circ_g.9 Os05g0150300_circ_g.10 Os05g0150300_circ_g.11 Os05g0150300_circ_g.12
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0150300-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAACAGAAGAGGAGGTGCAGCGGTACG
CTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATGgatgaaaacaaacttgattttaagaagt
tggtcactgacaactggatagagccaaccagcagaagagaaaggaagcgaaagtatgctttata
taactatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 511
Transcript exons: 2881938-2882017,2882114-2882203,2882307-2882376,2882636-
2882681,2882766-2882824,2882984-2883149
GATGAAAACAAACTTGATTTTAAGAAGTTGGTCACTGACAACTGGATAGAGCCAACCAGCAGAA
GAGAAAGGAAGCGAAACTACTCTGAGTCTGATTATTTCAAGCAAGCACTTCGCCAAGGTGCACC
AGCAAAACCTAGGGAACCGAGAATTCCTCGAATGCCACACTTGCATGATTTCCAGTTCTTCAAC
ACTCAGAGACTCAATGAATTATATGAGAAGGAAGTCAAATACCTTGTGCAAGCAAATCAGAAAA
AGGATACGGTTGGTGAGGGTGATGACGAAGATCAACTGGAACCGTTGACTGTGGAGGAGCAAGA
AGAGAAAGAGCAGCTATTGGAAGAGGGCTTTTCGACATGGACAAGGAGGGACTTCAATACATTC
ATCCGTGCTTGTGAGAAGTACGGTCGTAATGACATAAAGAACATATCCTCTGAAATGGAGGGGA
AAACAGAAGAGGAGGTGCAGCGGTACGCTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATG
						
					

						Genomic sequence
						
							GATGAAAACAAACTTGATTTTAAGAAGTTGGTCACTGACAACTGGATAGAGCCAACCAGCAGAA
GAGAAAGGAAGCGAAAGTATGCTTTATATAACTATGTTATGTCCATTTTTAATAACGAGAATAA
TAGTCTCCTTCTGATCAGACTATTTTTTTGTTAATATGTTTCTATTAGCTACTCTGAGTCTGAT
TATTTCAAGCAAGCACTTCGCCAAGGTGCACCAGCAAAACCTAGGGAACCGAGAATTCCTCGAA
TGCCACACTTGTAAGCTTGTTCACATAGTCTTTTTTTTTTCATTTTTCAAAATTTTTAATATTT
TTTTCATTTAATTGCAGTGGTGTACTCATTTTGGTTTTGTTTTTGTTAGGCATGATTTCCAGTT
CTTCAACACTCAGAGACTCAATGAATTATATGAGAAGGAAGTCAAATACCTTGTGGTAATCTCT
CCACTAGAACTATTTGCGATATCAGTTTTTTTACTTATGTCAGAAGCATGAGACATTATATTAC
TATATGATAGGTCATTAGGTTGCCTTTGTTTGTGATATATTATTCCCTAGTCATGTAGAATTTC
CAGATAAATTGGTTTTCCCAATGTCCAACATATTGTCTATGTGTACATGCTACTAAATGAGACT
GAGAATTGTTTTCGTGATTCTTGATCTTAATTTTTACCTGTTTACAAATCTTAACCAGCAAGCA
AATCAGAAAAAGGATACGGTTGGTGAGGGTGATGACGAAGGTATTACCAACTATGCATTTATAG
TGGCACTAAAGCAGATAGATGTTTTTTTTTTGTTCTGACAAGTTCTGTTTTAATATTTAGATCA
ACTGGAACCGTTGACTGTGGAGGAGCAAGAAGAGAAAGAGCAGCTATTGGAAGAGGTGGTTACA
AACAATGAAAATCCTTTTTGGATTTAGTGTTACTGTTGTTTATTCTAGGGGGGAAAAAGGACAT
GCTGTTTTTGTCGTTCAATATATCTGCCTGCTTTATATCTGGTTCCTTCTCTGAGTTTGTTTGG
TTTTGCATTGTATAATATCCAGGGCTTTTCGACATGGACAAGGAGGGACTTCAATACATTCATC
CGTGCTTGTGAGAAGTACGGTCGTAATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAA
CAGAAGAGGAGGTGCAGCGGTACGCTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATG
						
					

			
		

Sequences
Splice junction sequence	AATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAACAGAAGAGGAGGTGCAGCGGTACG CTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATGgatgaaaacaaacttgattttaagaagt tggtcactgacaactggatagagccaaccagcagaagagaaaggaagcgaaagtatgctttata taactatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 511 Transcript exons: 2881938-2882017,2882114-2882203,2882307-2882376,2882636- 2882681,2882766-2882824,2882984-2883149 GATGAAAACAAACTTGATTTTAAGAAGTTGGTCACTGACAACTGGATAGAGCCAACCAGCAGAA GAGAAAGGAAGCGAAACTACTCTGAGTCTGATTATTTCAAGCAAGCACTTCGCCAAGGTGCACC AGCAAAACCTAGGGAACCGAGAATTCCTCGAATGCCACACTTGCATGATTTCCAGTTCTTCAAC ACTCAGAGACTCAATGAATTATATGAGAAGGAAGTCAAATACCTTGTGCAAGCAAATCAGAAAA AGGATACGGTTGGTGAGGGTGATGACGAAGATCAACTGGAACCGTTGACTGTGGAGGAGCAAGA AGAGAAAGAGCAGCTATTGGAAGAGGGCTTTTCGACATGGACAAGGAGGGACTTCAATACATTC ATCCGTGCTTGTGAGAAGTACGGTCGTAATGACATAAAGAACATATCCTCTGAAATGGAGGGGA AAACAGAAGAGGAGGTGCAGCGGTACGCTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATG
Genomic sequence	GATGAAAACAAACTTGATTTTAAGAAGTTGGTCACTGACAACTGGATAGAGCCAACCAGCAGAA GAGAAAGGAAGCGAAAGTATGCTTTATATAACTATGTTATGTCCATTTTTAATAACGAGAATAA TAGTCTCCTTCTGATCAGACTATTTTTTTGTTAATATGTTTCTATTAGCTACTCTGAGTCTGAT TATTTCAAGCAAGCACTTCGCCAAGGTGCACCAGCAAAACCTAGGGAACCGAGAATTCCTCGAA TGCCACACTTGTAAGCTTGTTCACATAGTCTTTTTTTTTTCATTTTTCAAAATTTTTAATATTT TTTTCATTTAATTGCAGTGGTGTACTCATTTTGGTTTTGTTTTTGTTAGGCATGATTTCCAGTT CTTCAACACTCAGAGACTCAATGAATTATATGAGAAGGAAGTCAAATACCTTGTGGTAATCTCT CCACTAGAACTATTTGCGATATCAGTTTTTTTACTTATGTCAGAAGCATGAGACATTATATTAC TATATGATAGGTCATTAGGTTGCCTTTGTTTGTGATATATTATTCCCTAGTCATGTAGAATTTC CAGATAAATTGGTTTTCCCAATGTCCAACATATTGTCTATGTGTACATGCTACTAAATGAGACT GAGAATTGTTTTCGTGATTCTTGATCTTAATTTTTACCTGTTTACAAATCTTAACCAGCAAGCA AATCAGAAAAAGGATACGGTTGGTGAGGGTGATGACGAAGGTATTACCAACTATGCATTTATAG TGGCACTAAAGCAGATAGATGTTTTTTTTTTGTTCTGACAAGTTCTGTTTTAATATTTAGATCA ACTGGAACCGTTGACTGTGGAGGAGCAAGAAGAGAAAGAGCAGCTATTGGAAGAGGTGGTTACA AACAATGAAAATCCTTTTTGGATTTAGTGTTACTGTTGTTTATTCTAGGGGGGAAAAAGGACAT GCTGTTTTTGTCGTTCAATATATCTGCCTGCTTTATATCTGGTTCCTTCTCTGAGTTTGTTTGG TTTTGCATTGTATAATATCCAGGGCTTTTCGACATGGACAAGGAGGGACTTCAATACATTCATC CGTGCTTGTGAGAAGTACGGTCGTAATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAA CAGAAGAGGAGGTGCAGCGGTACGCTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005970* 						
					
						PMCS
						0.250218269

Conservation Information
Conserved circRNAs	osi_circ_005970*
PMCS	0.250218269

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2882194-2881939(+)
2883148-2881939(+)
2882312-2883116(-)
						
						Potential amino acid sequence
						
							MPHLHDFQFFNTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGF
STWTRRDFNTFIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG*(+)
MDENKLDFKKLVTDNWIEPTSRRERKRNYSESDYFKQALRQGAPAKPREPRIPRMPHLHDFQFF
NTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGFSTWTRRDFNT
FIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG*(+)
MQVWHSRNSRFPRFCWCTLAKCLLEIIRLRVVSLPFSSAGWLYPVVSDQLLKIKFVFIHLIPCI
FPGKL*(-)
						
						Sponge-miRNAs
						
							osa-miR397a 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2882194-2881939(+) 2883148-2881939(+) 2882312-2883116(-)
Potential amino acid sequence	MPHLHDFQFFNTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGF STWTRRDFNTFIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG(+) MDENKLDFKKLVTDNWIEPTSRRERKRNYSESDYFKQALRQGAPAKPREPRIPRMPHLHDFQFF NTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGFSTWTRRDFNT FIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG(+) MQVWHSRNSRFPRFCWCTLAKCLLEIIRLRVVSLPFSSAGWLYPVVSDQLLKIKFVFIHLIPCI FPGKL*(-)
Sponge-miRNAs	osa-miR397a
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os05g0150300_circ_g.13

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