Detail information of BGIOSGA019187_circ_g.1


General Information
CircRNA Name BGIOSGA019187_circ_g.1
ID in PlantcircBase osi_circ_005970
Alias 5:3125664|3126875
Organism Oryza sativa ssp. indica
Position chr5: 3125664-3126875  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA019187
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019187_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019187-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAACAGAAGAGGAGGTGCAGCGGTACG
CTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATGgatgaaaacaaacttgattttaagaagt
tggtcactgacaactggatagagccaaccagcagaagagaaaggaagcgaaagtatgctttata
taactatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGAAAACAAACTTGATTTTAAGAAGTTGGTCACTGACAACTGGATAGAGCCAACCAGCAGAA
GAGAAAGGAAGCGAAAGTATGCTTTATATAACTATGTTATGTCCATTTTTAATAACGAGAATAA
TAGTCTCCTTCTGATCAGACTATTTTTTTGTTAATATGTTTCTATTAGCTACTCTGAGTCTGAT
TATTTCAAGCAAGCACTTCGCCAAGGTGCACCAGCAAAACCTAGGGAACCGAGAATTCCTCGAA
TGCCACACTTGTAAGCTTGTTCACATAGTCTTTTTTTTTTTCATTTTTCAAAATTTTTAATATT
TTTTTCATTTAATTGCAGTGGTGTACTCATTTTGGTTTTGTTTTTGTTAGGCATGATTTCCAGT
TCTTCAACACTCAGAGACTCAATGAATTATATGAGAAGGAAGTCAAATACCTTGTGGTAATCTC
TCCACTAGAACTATTTGCGATATCAGTTTTTTTACTTATGTCAGAAGCATGAGACATTATATTA
CTATATGATAGGTCATTAGGTTGCCTTTGTTTGTGATATATTATTCCCTAGTCATGTAGAATTT
CCAGATAAATTGGTTTTCCCAATGTCCAACATATTGTCTATGTGTACATGCTACTAAATGAGAC
TGAGAATTGTTTTCGTGATTCTTGATCTTAATTTTTACCTGTTTACAAATCTTAACCAGCAAGC
AAATCAGAAAAAGGATACGGTTGGTGAGGGTGATGACGAAGGTATTACCAACTATGCATTTATA
GTGGCACTAAAGCAGATAGATGTTTTTTTTTGTTCTGACAAGTTCTGTTTTAATATTTAGATCA
ACTGGAACCGTTGACTGTGGAGGAGCAAGAAGAGAAAGAGCAGCTATTGGAAGAGGTGGTTACA
AACAATGAAAATCCTTTTTGGATTTAGTGTTACTGTTGTTTATTCTAGGGGGGAAAAAGGACAT
GCTGTTTTTGTCGTTCAATATATCTGCCTGCTTTATATCTGGTTCCTTCTCTGAGTTTGTTTGG
TTTTGCATTGTATAATATTCAGGGCTTTTCGACATGGACAAGGAGGGACTTCAATACATTCATC
CGTGCTTGTGAGAAGTACGGTCGTAATGACATAAAGAACATATCCTCTGAAATGGAGGGGAAAA
CAGAAGAGGAGGTGCAGCGGTACGCTAAAGTTTTCCAGGAAAGATACAAGGAATTAAATG
Conservation Information
Conserved circRNAs osa_circ_026605*
PMCS
Functional Information
Coding potential Y
Potential coding position 3126039-3126842(-)
3125920-3125665(+)
3126874-3125665(+)
Potential amino acid sequence MQVWHSRNSRFPRFCWCTLAKCLLEIIRLRVVSLPFSSAGWLYPVVSDQLLKIKFVFIHLIPCI
FPGKL*(-)
MPHLHDFQFFNTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGF
STWTRRDFNTFIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG*(+)
MDENKLDFKKLVTDNWIEPTSRRERKRNYSESDYFKQALRQGAPAKPREPRIPRMPHLHDFQFF
NTQRLNELYEKEVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLEEGFSTWTRRDFNT
FIRACEKYGRNDIKNISSEMEGKTEEEVQRYAKVFQERYKELNG*(+)
Sponge-miRNAs osa-miR397a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021