Detail information of Os04g0338100_circ_g.4


General Information
CircRNA Name Os04g0338100_circ_g.4
ID in PlantcircBase osa_circ_023445
Alias NA
Organism Oryza sativa
Position chr4: 15926974-15927305  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0338100
Parent gene annotation Similar to IN2-2 protein. (Os04t0338100-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0338100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACTTGGAATTGGAATAGTAGCTTACAGCCCACTTGGTAGAGGGTTCTTTTCTGGTGGAGCTA
AACTAGTGGAGTCTATCTGTTCAGGATGTTCGCAAGattggtgaactcaagaaactagttgaag
aaggaaagataaaatatattggtctatcggaagcatctgcatcaacaatcagaagggctcatgc
tgtacacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGGTGAACTCAAGAAACTAGTTGAAGAAGGAAAGATAAAATATATTGGTCTATCGGAAGCAT
CTGCATCAACAATCAGAAGGGCTCATGCTGTACACCCTATCACTGCAGTTCAGCTCGAGTGGTC
ATTATGGTCTAGAGACGTGGAAGAAGATATAATTCCAAATTAGTTTATCCATTGAAAAAAATCA
CATGCCCCATTTTAACTATTTTTCTTATTTCCATTTCAGAGAACTTGGAATTGGAATAGTAGCT
TACAGCCCACTTGGTAGAGGGTTCTTTTCTGGTGGAGCTAAACTAGTGGAGTCTATCTGTTCAG
GATGTTCGCAAG
Conservation Information
Conserved circRNAs osi_circ_005386*
PMCS 0.479811822
Functional Information
Coding potential Y
Potential coding position 15927168-15926978(+)
Potential amino acid sequence MPHFNYFSYFHFRELGIGIVAYSPLGRGFFSGGAKLVESICSGCSQDW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017