Detail information of BGIOSGA016143_circ_g.1


General Information
CircRNA Name BGIOSGA016143_circ_g.1
ID in PlantcircBase osi_circ_005386
Alias 4:13216080|13216439
Organism Oryza sativa ssp. indica
Position chr4: 13216080-13216439  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016143
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016142_circ_ag.1 BGIOSGA016142_circ_ag.2 BGIOSGA016142_circ_ag.3 BGIOSGA016143_circ_ag.1 BGIOSGA016143_circ_ag.2 BGIOSGA016143_circ_ag.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016143-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTGGAATTGGAATAGTAGCTTATAGCCCACTTGGTAGAGGGTTCTTTTCTGCTGGAGCTAAA
CTAGTGGAGTCTCTATCAGATCAGGATTTTCGCAAGattggcgaactcaagaaactagttgaag
aaggaaagataaaatatattgggttatctgaagcatctgcatcaactatcagaagggctcatgc
tgtacacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGGCGAACTCAAGAAACTAGTTGAAGAAGGAAAGATAAAATATATTGGGTTATCTGAAGCAT
CTGCATCAACTATCAGAAGGGCTCATGCTGTACACCCTATCACTGCTGTTCAGCTTGAGTGGTC
ATTATGGTCTAGAGACGTGGAAGAAGATATAATTCCAACTTGCAGGTATTGAAAAAAACACCAA
ATTAGTTTGTCTGTTGAAGAAAATCACATGCTCCATTTGAACTATTGTTCTTATTTCCATTTCA
GAGAACTTGGAATTGGAATAGTAGCTTATAGCCCACTTGGTAGAGGGTTCTTTTCTGCTGGAGC
TAAACTAGTGGAGTCTCTATCAGATCAGGATTTTCGCAAG
Conservation Information
Conserved circRNAs osa_circ_023445*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021