Detail information of BGIOSGA014434_circ_g.1


General Information
CircRNA Name BGIOSGA014434_circ_g.1
ID in PlantcircBase osi_circ_014727
Alias Chr01:885662_887012(ZS97RS2), Chr01:940651_942007(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28941696-28943055  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, find_circ
Parent gene BGIOSGA014434
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CG-TA
Number of exons covered BGIOSGA014434-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAATCATCGTAGTCCTCATCATACTCATCATAGTCATCGTCGTACTCGTCATCGTAGTCAGGC
CCAGAGACAACCTTGCGTGGCATCCTGCTGACACAGcctttctcatgagatatgctagcattct
ttatctcagggtcaccatcaaagtctgtagtacgagtattcactggcatcttggtacagtcaga
tttcggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTCATGAGATATGCTAGCATTCTTTATCTCAGGGTCACCATCAAAGTCTGTAGTACGAG
TATTCACTGGCATCTTGGTACAGTCAGATTTCGGCATCGAAGGTGTCCCAAAATCACTTGGTAT
CCCATGGACTGTAATTTAATAGTTATAAGTACACTATGATTACATTAGAATTCCTTGTTGGAAT
ACAAATTGTGATTCAAAGAAAATTAGAATGGGTGAAGCATGTTACCTTTTATTGAACCATCCTT
GGCAGATTTCATAAAGGATTCTCGAAAAACCCACACATCTCACAATACACCATGCTTTCATGAT
TATCGAACATGCACATGGAGCATCTCCAAAGCACAGGCACCGTACTTGAGGACTTCTTCGATGA
CTCTGCACAATAGAGTGGTGACATAATATTAGAGATCAAGGGAGCTGTACTAGACGCAGTTAGC
TTGATATGCTGAATAAATCACAAAAAAAAACTCACTGTACAACAACAAAGTGAAGCATTCAGTG
CATGGAGCTTATGAGGAAAGCAACGGTTAAATGTATAGGCATATGAATTATTTCAAAAGGCCTC
AAATATATAGAACAATAATATGCATATGCACCAGGATTCAGTAAGCAACCAGTAGGTAACCCTG
GTAGTTCTAACTGGCAGCCAGCTATGTTTCGATTCTCACCCAATTTGGGTAGATTTGATTTGCA
GTAAGTTTTTATTTTGATGGACTAACTGGATGAATGATATTTGACTCATTCCAAAAAATGCATG
TTGAATAACAATGCCTTCGAGACAACAAATATCTGAAGTGCATATGATGGGATAAATGGGCAAG
GAAATTAGAGCAAGGCCAGGTAATCGGCAGACATAAGCTACACGATCACTGCATTTGTTTGAAC
AAGCAATGCTATTGGAAGTTTTAGAGTAATTAAGCATACCGTGTTCTTATTTGCATATTCAGGC
AATAGAGGATGCGATAGCAAGTACAAATGCAGGATGGAAACAATGTAATGTCATTAACAACATT
TAACACCACTGAGCAAATTATGATAACCGGGTGAACGCTCCTTGTAACCTACACCGCCGTAACT
AACCTACACGAGTAGATATGTTAAGTGTGCATCATGAAGCGACTCTAATAGCTATTTCACCATT
CTTACAAGCTGAGGTGTACACTGTCTAGTACTAGCTTCAAACCTTCGACATAATACCTTTCTCC
TCCTTCACGGGGTGCTGAATGTCGTCACTGTGCCCGGTCTCACCGTAATCATCGTAGTCCTCAT
CATACTCATCATAGTCATCGTCGTACTCGTCATCGTAGTCAGGCCCAGAGACAACCTTGCGTGG
CATCCTGCTGACACAG
Conservation Information
Conserved circRNAs osa_circ_025043
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021