Detail information of Os04g0596500_circ_g.2


General Information
CircRNA Name Os04g0596500_circ_g.2
ID in PlantcircBase osa_circ_025043
Alias NA
Organism Oryza sativa
Position chr4: 30088700-30090065  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0596500
Parent gene annotation Non-protein coding transcript. (Os04t0596500-01);Translation elo
ngation factor EFTu/EF1A, C-terminal domain containing protein.
(Os04t0596500-02)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0596500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTAGTCCTCATCATACTCATCATAGTCATCGTCGTACTCGTCATCGTAGTCAGGCCCAGAGAC
AACCTTGCGTGGCATCCTGCTGACACAGCGGCGTACctttctcatgagatatgctagcattctt
tatctcagggtcaccatcaaagtctgtagtacgagtattcactggcatcttggtacagtcagat
ttcggcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTCATGAGATATGCTAGCATTCTTTATCTCAGGGTCACCATCAAAGTCTGTAGTACGAGT
ATTCACTGGCATCTTGGTACAGTCAGATTTCGGCATCGAAGGTGTCCCAAAATCACTTGGTATC
CCATGGACTGTAATTTAATAGTTATAAGTACACTATGATTACATTAGAATTCCTTGTTGGAATA
CAAATTGTGATTCAAAGAAAATTAGAATGGGTGAAGCATGTTACCTTTTATTGAACCATCCTTG
GCAGATTTCATAAAGGATTCTCGAAAAACCCCACACATCTCACAATACACCATGCTTTCATGAT
TATCGAACATGCACATGGAGCATCTCCAAAGCACAGGCACCGTACTTGAGGACTTCTTCGATGA
CTCTGCACAATAGAGTGGTGACATAATATTAGAGATCAAGGAGCTGTACTAGGCGCAGTTAGCT
TGATATGCTGAATAAATCACAAAAAAAACTCACTGTACAACAACAAAGTGAAGCATTCAGTGCA
TGGAGCTTATGAGGAAAGCAACGGTTAAATGTATAGGCATATGAATTATTTCAAAAGGCCTCAA
ATATATAGAACAATAATATGCATATGCACCAGGATTCAGTAAGCAACCAGTAGGTAACCCTGGT
AGTTCTAACTGGCAGCCAGCTATGTTTCGATTCTCACCCAATTTGGGTAGATTTGATTTGCAGT
AAGTTTTTATTTTGATGGACTAACTGGATGAATGATATTTGACTCATTCCAAAAAATGCATGTT
GAATAACAATGCCTTCGAGACAACAAATATCTGAAGTGCATATGATGGGATAAATGGGCAAGGA
AATTAGAGCAAGGCCAGGTAATCGGCAGACATAAGCTACACGATCACTGCATTTGTTTGAACAA
GCAATGCTATTGGAAGTTTTAGAGTAATTAAGCATACCGTGTTCTTATTTGCATATTCAGGCAA
TAGAGGATGCGATAGCAAGTACGAATGCAGGATGGAAACAATGTAATGTCATTAACAACATTTA
ACACCACTGAGCAAATTATGATAACCGGGTGAACGCTCCTTGTAACCTACACCGCCGTAACTAA
CCTACACGAGTAGATATGTTAAGTGTGCATCATGAAGCGACTCTAATAGCTATTTCACCATTCT
TACAAGCTGAGGTGTACACTGTCTAGTACTAGCTTCAAACCTTCGACATAATACCTTTCTCCTC
CTTCACGGGGTGCTGAATGTCGTCACTGTGCCCGGTCTCACCGTAATCATCGTAGTCCTCATCA
TACTCATCATAGTCATCGTCGTACTCGTCATCGTAGTCAGGCCCAGAGACAACCTTGCGTGGCA
TCCTGCTGACACAGCGGCGTAC
Conservation Information
Conserved circRNAs osi_circ_014727
PMCS 0.117658358
Functional Information
Coding potential Y
Potential coding position 30090046-30090018(-)
30088725-30090018(-)
Potential amino acid sequence MPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESSKKSSSTVPVLWRCSM
CMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDCTKMPVNTRTTDFDG
DPEIKNASISHEKGTPLCQQDATQGCLWA*(-)
MLAYLMRKVRRCVSRMPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESS
KKSSSTVPVLWRCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSD
CTKMPVNTRTTDFDGDPEIKNASISHEKGTPLCQQDATQGCLWA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017