Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0596500_circ_g.2 |
ID in PlantcircBase | osa_circ_025043 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 30088700-30090065 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0596500 |
Parent gene annotation |
Non-protein coding transcript. (Os04t0596500-01);Translation elo ngation factor EFTu/EF1A, C-terminal domain containing protein. (Os04t0596500-02) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0596500-02:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014727 |
PMCS | 0.117658358 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30090046-30090018(-) 30088725-30090018(-) |
Potential amino acid sequence |
MPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESSKKSSSTVPVLWRCSM CMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDCTKMPVNTRTTDFDG DPEIKNASISHEKGTPLCQQDATQGCLWA*(-) MLAYLMRKVRRCVSRMPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESS KKSSSTVPVLWRCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSD CTKMPVNTRTTDFDGDPEIKNASISHEKGTPLCQQDATQGCLWA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |