Detail information of Os03g0355600_circ_g.6


General Information
CircRNA Name Os03g0355600_circ_g.6
ID in PlantcircBase osa_circ_019870
Alias NA
Organism Oryza sativa
Position chr3: 13589249-13590276  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0355600
Parent gene annotation Similar to Adapter-related protein complex 2 beta 1 subunit (Bet
a-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit
) (Clathrin assembly protein complex 2 beta large chain) (AP105B
) (Fragment). (Os03t0355600-01);Similar to predicted protein. (O
s03t0355600-02);Similar to predicted protein. (Os03t0355600-03);
Similar to predicted protein. (Os03t0355600-04)
Parent gene strand -
Alternative splicing Os03g0355600_circ_g.1 Os03g0355600_circ_g.2 Os03g0355600_circ_g.3 Os03g0355600_circ_g.4 Os03g0355600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0355600-03:2
Os03t0355600-02:3
Os03t0355600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTGCTGACAAAAGCGTAACAAGAGGGGGTGCCATTTTCTTACAGAGATTACGGACAACATC
TGTGCTAGTAATGAGCTCCATTTGTAAAAGGATTATcttagcctctggttcatctaaggtgtct
aggctttcacagagtgttgcgatgatcgactcatacctgcattttggcaagaaaacagttagtt
ttatagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGCCTCTGGTTCATCTAAGGTGTCTAGGCTTTCACAGAGTGTTGCGATGATCGACTCATAC
CTGCATTTTGGCAAGAAAACAGTTAGTTTTATAGATGCAATTCTTGAGCAAAAACAATAAAAAA
ATTGAAGAGTTCCTTTGTTACATAATATAGAACATTGATCTGTCATGCCACAGTACTCACGTAT
TAGGGTAGCGCCTGAAGATGTCCTTAATAACAATTATAGCCTCCTGCACAACATAATTAACCTT
TATCTTAATCAGCTCAAGCAAAACACTGATACACCTTTCAGCAGCTCTCTCCAACTTAATTGCA
CATCTTCCAATAGCACGAACAGCTTTGCGGACAAAGTCAACATCCACCTCTGTGGCATACTCTT
TGAATTCCAATAGAACCTATAGAAGGAGCTCTGTTAGCTTCTTGAACAAAATTTACAGAAAAGA
AACCATCTGCTCCACAAGGAGTAAGACATTCAACATGGTTGGCAAGTTAATCCAATTTTTGAAA
CTGATATAATAATTGTTTAGCCTTTCTTCCAACAATACAAAAGCACTTCTGGTAGACATGAGAC
CATACAAAAGCAGAAAAACATTTAGTTAAGGAAATCTTTCACTGCAACTAACATGCGCTGGACA
CAATAATAATATAAAACAGCAGATTTTTTACCTGATCTATGTTTCTGTCAGAGGCAAGCTTTAT
CATAATCTCCAGCTTTTCCATCTTAACATATATTGGGTCATTATACTTGCAAAAGAAGACCTGT
TGCAAGAACAGCCTGTTGGGTCAGTAACACATTTGCGTTACTGGAAATGAGTGGCTCAGATGAG
GAAGAAAATATATCACCTTAATTTCATGTGCAAGTATAGTAGGCCTTTTCTGAACAATCAGATT
AATGTTCCTTAACGCTACATACTGAATCTCAGGTTCTGCTGACAAAAGCGTAACAAGAGGGGGT
GCCATTTTCTTACAGAGATTACGGACAACATCTGTGCTAGTAATGAGCTCCATTTGTAAAAGGA
TTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.220772641
Functional Information
Coding potential Y
Potential coding position 13590252-13589445(+)
13590263-13589251(-)
Potential amino acid sequence MSSICKRIILASGSSKVSRLSQSVAMIDSYVLG*(+)
MELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDP
IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVL
LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKIILLQMELITSTDV
VRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLE
IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVN
YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKIILLQMELITSTDVVRNLCKKMA
PPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDR
NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIV
IKDIFRRYPNTYESIIATLCESLDTLDEPEAKIILLQMELITSTDVVRNLCKKMAPPLVTLLSA
EPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF
KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP
NTYESIIATLCESLDTLDEPEAK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017