Detail information of BGIOSGA033481_circ_g.3


General Information
CircRNA Name BGIOSGA033481_circ_g.3
ID in PlantcircBase osi_circ_008732
Alias Chr10:25017511_25017858(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21704100-21704447  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033481
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033481_circ_g.1 BGIOSGA033481_circ_g.2 BGIOSGA033481_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TT-CA
Number of exons covered BGIOSGA033481-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGACAATGAACTTATTCCTAGGATGCCGTGCATCTGATAGAGCATGACTGCGGAATAGTGAAT
TTATGCCAAGGATATTTTATTGTCAACTATCAATGTtgtatgcttcgtttaaatccttactttt
ctcaagaaatatatatatcagcgcttctccttatcattactctcatatcctggataacactgca
tctgtatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTATGCTTCGTTTAAATCCTTACTTTTCTCAAGAAATATATATATCAGCGCTTCTCCTTATCA
TTACTCTCATATCCTGGATAACACTGCATCTGTATTTAATGTCACATTGACAACTGATAAAAAG
TGTTATGGACTGCAATCGGATTTGAACCTTAACCTTTAACCTACTGATGTCCACTAAATTTGTA
TAACAGACAGTGGCCTCTTGTCTCAAATAACAGACCATAGACTTCTAGTAGAATATGTGACAAT
GAACTTATTCCTAGGATGCCGTGCATCTGATAGAGCATGACTGCGGAATAGTGAATTTATGCCA
AGGATATTTTATTGTCAACTATCAATGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021