Detail information of BGIOSGA033481_circ_g.1


General Information
CircRNA Name BGIOSGA033481_circ_g.1
ID in PlantcircBase osi_circ_008730
Alias Chr10:24545413_24546924(MH63RS2), Chr10:24545413_24546924(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21703413-21704924  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, CIRI2, find_circ
Parent gene BGIOSGA033481
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033481_circ_g.2 BGIOSGA033481_circ_g.3 BGIOSGA033481_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033481-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAA
ACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGggggataagcagcccttgccatgggaaa
tgcggttaagggttgcgtattacattgcgcaggcactcgatcactgcaatgccgagaaccgaaa
aatctatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGGATAAGCAGCCCTTGCCATGGGAAATGCGGTTAAGGGTTGCGTATTACATTGCGCAGGCAC
TCGATCACTGCAATGCCGAGAACCGAAAAATCTATCATGACTTGAATGCTTATAGAGTACTTTT
TGATGAGGTATGTTTGTTGCTGCTAGTACATTCCACTCAAAACACCTTTTGTTTCTGCTGATTT
TGCATTGCTTTTCACTTCCTTCCTCCTGTGAACTCGGATGCTTTCTGATCAAAATTTACTACTT
TCTGAAGCTTTGCTGATGTCTGTAACTACCAAGAGAATTCTAACTTTGGCATGATTTATTCTAT
CAGGAAGGTGATCCTCGGCTGTCAAGTTTTGGACTAATGAAGAACAGCCGCGATGGGAAAAGTT
ATAGCACTAATCTGGCTTACACCCCGCCTGAGTTTCTACGAACTGGTAGGAATTTACACATGAT
CCTTATTACCGCACTCATGGGCACCTTACTCTATTGATGTTTTCCAGCTAAAATGAAACATGTC
AACTTATTTCAAGCTTGCTATATATTTACTCCCAACTACTAACATTGTTTGACTGCACCGAACA
ATTTGTGCATGACACTTGTATGACAGGCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGA
ACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATGTATGCTTCGTTTAAA
TCCTTACTTTTCTCAAGAAATATATATATCAGCGCTTCTCCTTATCATTACTCTCATATCCTGG
ATAACACTGCATCTGTATTTAATGTCACATTGACAACTGATAAAAAGTGTTATGGACTGCAATC
GGATTTGAACCTTAACCTTTAACCTACTGATGTCCACTAAATTTGTATAACAGACAGTGGCCTC
TTGTCTCAAATAACAGACCATAGACTTCTAGTAGAATATGTGACAATGAACTTATTCCTAGGAT
GCCGTGCATCTGATAGAGCATGACTGCGGAATAGTGAATTTATGCCAAGGATATTTTATTGTCA
ACTATCAATGTTTATGTCAGTAGGTTTCTCACTTGATTTGTATGGAATTCCAGGCACTTGATTT
GATAAGAGGGAAGAATATACTGTTGCTCATGGATTCCTCCTTAGAAGGGCAGTATGCTAATGAA
GATGCTTCAAAACTAGTTGACCTTGCGTCGAAATGCTTGCAATTTGAAGCGAGGGACAGACCCA
ATATAAAGTATCTCTTGTCTTCTGTTGGGCCTCTTCAGAAGCAAAAGGAGGTAAATAACTTGAC
AGCCTTTTGTCGGTTGCTAATGTTTTTCATTGCATTTGGTAACACCGTTTATTTCTTATATCAA
TCATTCTAGGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTA
TTCTTTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCT
CAAAACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAG
Conservation Information
Conserved circRNAs osa_circ_008099
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021