Detail information of BGIOSGA001873_circ_g.2


General Information
CircRNA Name BGIOSGA001873_circ_g.2
ID in PlantcircBase osi_circ_008994
Alias Chr12:25700466_25701056(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 11183176-11183766  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA001873
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001873_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001873-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCGCACAGACAGCACCGGTATGAAATTGCTCGACACCTCTGATCAATAGTGCTGTCTGTAAA
ATGTTTGAATTTCCTGTATGCCTTCTTAGCACCAGTcttctccagtatccccttcaggaaagga
agcctctgctgcaactgctctagctgagatagtccttgtataaatgtcactggtatcagaaaga
ataacata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCCAGTATCCCCTTCAGGAAAGGAAGCCTCTGCTGCAACTGCTCTAGCTGAGATAGTCCT
TGTATAAATGTCACTGGTATCAGAAAGAATAACATAAAAACAATTGAACCAAGGAGCGTAGCTA
TTCGGCGAATCCAAAGCTGCTTATAAGGTAGCCAAAGATTTGACCAATACACATCATCTGGTTC
TGGAGCTAGATCAGTAACCCATTTCATAGGGTTAGATGTTTGGAGTATTTCTGAGGCAACAAGA
GCAGCATACCGAGTTCTGAAATATACAAAAGCAGCTGCACATTCCTGGTACAATTCAACAGTTA
AAGTTACTGGTTTTATACTGACTAATTGATGAACTACCAGTAAAAGAGCTAATATTTGTGAGAT
TACAAGTTCAACCTGATCATCTAGTTTCAAGCTGGAATCTTGAAGGTCAGATTTCCCCTGATTC
TGCTCAAGCCCAGTTGCCAACAGCTGGAAAGAATTAGATGAGGCTCCGCACAGACAGCACCGGT
ATGAAATTGCTCGACACCTCTGATCAATAGTGCTGTCTGTAAAATGTTTGAATTTCCTGTATGC
CTTCTTAGCACCAGT
Conservation Information
Conserved circRNAs osa_circ_012462
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021