Detail information of BGIOSGA001873_circ_g.3


General Information
CircRNA Name BGIOSGA001873_circ_g.3
ID in PlantcircBase osi_circ_001986
Alias 1:11183610|11183931
Organism Oryza sativa ssp. indica
Position chr1: 11183610-11183931  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA001873
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001873_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA001873-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATTCAATTCAAGGAACCGGAGATTAATGAACACTACTCTATATAAAAGCACAGAGCTGAGA
ATCAAATTAGTGGGAAGAATGTGATAGGTTTTGCTTatttcccctgattctgctcaagcccagt
tgccaacagctggaaagaattagatgaggctccgcacagacagcaccggtatgaaattgctcga
cacctctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTCCCCTGATTCTGCTCAAGCCCAGTTGCCAACAGCTGGAAAGAATTAGATGAGGCTCCGCA
CAGACAGCACCGGTATGAAATTGCTCGACACCTCTGATCAATAGTGCTGTCTGTAAAATGTTTG
AATTTCCTGTATGCCTTCTTAGCACCAGTCTGCCAGAATATGACTAGAATTGTTACACAATAAG
AAGAAAGTGAAATAAAAATATGCAAAGCCATAAATTCAATTCAAGGAACCGGAGATTAATGAAC
ACTACTCTATATAAAAGCACAGAGCTGAGAATCAAATTAGTGGGAAGAATGTGATAGGTTTTGC
TT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021