CircRNA Name |
POPTR_0004s02080_circ_g.1 |
ID in PlantcircBase |
pop_circ_001186 |
Alias |
Chr04:1429930-1430158 |
Organism |
Populus trichocarpa |
Position |
chr4: 1306650-1306878 JBrowse» |
Reference genome |
Populus trichocarpa genome v3.0 |
Type |
e-circRNA
|
Identification method |
CIRI2; circRNA_finder |
Parent gene |
POPTR_0004s02080 |
Parent gene annotation |
NA |
Parent gene strand |
- |
Alternative splicing |
POPTR_0004s02080_circ_g.2 POPTR_0004s02080_circ_g.3 POPTR_0004s02080_circ_g.4 POPTR_0004s02080_circ_g.5 |
Support reads |
94,180,112,73,91,25,168,78,56,96 |
Tissues |
leaf; cambium; xylem |
Exon boundary |
No-No
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
GT-AA
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
POPTR_0004s02080.1:1 POPTR_0004s02080.2:1
|