Plant Circular RNA Database

Detail information of Os07g0562800_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os07g0562800_circ_g.3
					
						ID in PlantcircBase
						osa_circ_034270
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 22490263-22492007  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0562800						
					
						Parent gene annotation
						
							Similar to Myosin heavy chain class VIII A2 protein. (Os07t05628
00-01);Similar to Myosin heavy chain class VIII A2 protein. (Os0
7t0562800-02);Similar to Myosin heavy chain class VIII A2 protei
n. (Os07t0562800-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0562800_circ_g.4 Os07g0562800_circ_g.5 Os07g0562800_circ_g.6 Os07g0562800_circ_g.7 Os07g0562800_circ_g.8 Os07g0562800_circ_g.9 Os07g0562800_circ_g.10 Os07g0562800_circ_g.11 Os07g0562800_circ_g.12 Os07g0562800_circ_g.13 Os07g0562800_circ_g.14 Os07g0562800_circ_g.15 Os07g0562800_circ_g.16 Os07g0562800_circ_g.17 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0562800-03:5
Os07t0562800-01:6
Os07t0562800-02:6

General Information
CircRNA Name	Os07g0562800_circ_g.3
ID in PlantcircBase	osa_circ_034270
Alias	NA
Organism	Oryza sativa
Position	chr7: 22490263-22492007 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0562800
Parent gene annotation	Similar to Myosin heavy chain class VIII A2 protein. (Os07t05628 00-01);Similar to Myosin heavy chain class VIII A2 protein. (Os0 7t0562800-02);Similar to Myosin heavy chain class VIII A2 protei n. (Os07t0562800-03)
Parent gene strand	-
Alternative splicing	Os07g0562800_circ_g.4 Os07g0562800_circ_g.5 Os07g0562800_circ_g.6 Os07g0562800_circ_g.7 Os07g0562800_circ_g.8 Os07g0562800_circ_g.9 Os07g0562800_circ_g.10 Os07g0562800_circ_g.11 Os07g0562800_circ_g.12 Os07g0562800_circ_g.13 Os07g0562800_circ_g.14 Os07g0562800_circ_g.15 Os07g0562800_circ_g.16 Os07g0562800_circ_g.17
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0562800-03:5 Os07t0562800-01:6 Os07t0562800-02:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTCAAATAGCATGGGACGTTGTTTGCTATTTGGCTGGATGCATCGAATGAAATGAGGAGTTGT
GTTCTCCAATTGCTGCATCAGCTTGAACAGTTGAGCctgcagagaggagagctgcttcttccat
gcctcttccatagatttcattttggcctcatattctgaccatttcttctcatattgatccaatt
gttgcttt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCAGAGAGGAGAGCTGCTTCTTCCATGCCTCTTCCATAGATTTCATTTTGGCCTCATATTCT
GACCATTTCTTCTCATATTGATCCAATTGTTGCTTTAGCATTTCGTTTTCTTCCTCCTTATCTC
GCAATGCAGCCTCAGCTTTTGAAACACGTCCCTGGAGTTCCGTGATAACTGGTTGCCGAGGATA
ATCTCCATTCGTTTCCTGCCATGGGATGCTAATCGTTAGAGGATACACCTTTGACATTTATGCC
ACTAGAATGTTGAATCAATTCAAAGCTTGTACAGGGAGGACTTCTCAATAGGGAAACTTGGATA
TCACAAGTAGTGAAAGTTTTCAATAGCTATGTGTTGGTGATTAGGTCAATATTGTGCTCATGCA
AATAGCAGAAACAAAATCTCTAACATCAATCTCAAATCCTCGGTCAGATCATGTACTGCCCAAT
TGCTCACTCAATACTGGATTAAAGCAGTAAGCAGCTTGGGAGGTGAGGGAGGATTACATAATAT
TGAGATATATAAATCATTTGCAGAGAACTCACATGATACATCCGCGCTTGTGAAACATTATTCC
TTACATGTATAACTTTTCTGTGACTAGCCTTTGAGTCCTTCTCTTCCTTCAGGCACTTATATTT
CTTCCTGGCCAAGCACCCACGCATCACTGCAGACGCATACAGAAGCACATGATTAGATGGATGT
GCTATATATTGCAACATGATGTCACTAAAGCCTTCTCACAACTCTTAAAGTACCTGATTGTAGA
AGAACAACATATTTGAGCTGATCAATAAACATGGTAGCTGCAATTCGACGCCTAGCATACTTCT
GTATGAGAACAGATGCCTTCCATCTCTTTACAAGATGATCAAAGTGAACTCTTGCCTTTTCACC
TCTTATAACTGCAAATTTGCAAGGCAAAAATGTTAGACCAAATATCTGGCATCTCCGAACTGAT
AACTAAAGCCAGGGAGTGGTTTGAAAGTCAAACATCCCACACATGCCAGAAGGTCAATTTATTA
GGAATATTAAAAACTAAAAACATTAGAAAAAATAAAGAGAATTACATGATTGCAAAGTCATTGC
TCCTTTCTTCAGTCCCTGGTATTCTTGTCTAGTACACAACCCACGGAAGTTCTTCTGAATCCGA
AGGGCTCCATGGAGCATCCGATTCTTAGCATTTTCCAGTGCAGCAACCTACAAGTTATCAATGA
GAACGACAATCCATATCAAGCCAGTGTGTGCTATTGGACTGTTGAAGTGTATTTTATCCAAAAA
TGTAAGAATCGTTGTACCTGTCCTGTACGAAGAAACAATTTTGTATAGCCAACTTGATACATTT
CTGGTGGAATATTGAACTGTTGTAATACAGCAACCGAAATACTAAGAGGATCCTGCGATGCAAT
GGAACGCAGGAGAAGACACCCATATCTGCAGATTATAAAAACAAAAATGGAATTTCGAAATCAG
CTAGTACACTAGTACTGAACATTGTAAACAAGTATGCTCATGAAGTCTGATTCTGCAAACTAGC
AACCTTTCAGCAAACTGTTGGTGAGTCATCCTAGTTGGATAGCCTGCTCTTGATATCCGCACAA
CTTCGAGCACCCCACAACACTTAAGCTGGTGTGAAACAAGATCATGCTCAAATAGCATGGGACG
TTGTTTGCTATTTGGCTGGATGCATCGAATGAAATGAGGAGTTGTGTTCTCCAATTGCTGCATC
AGCTTGAACAGTTGAGC
						
					

			
		

Sequences
Splice junction sequence	GCTCAAATAGCATGGGACGTTGTTTGCTATTTGGCTGGATGCATCGAATGAAATGAGGAGTTGT GTTCTCCAATTGCTGCATCAGCTTGAACAGTTGAGCctgcagagaggagagctgcttcttccat gcctcttccatagatttcattttggcctcatattctgaccatttcttctcatattgatccaatt gttgcttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCAGAGAGGAGAGCTGCTTCTTCCATGCCTCTTCCATAGATTTCATTTTGGCCTCATATTCT GACCATTTCTTCTCATATTGATCCAATTGTTGCTTTAGCATTTCGTTTTCTTCCTCCTTATCTC GCAATGCAGCCTCAGCTTTTGAAACACGTCCCTGGAGTTCCGTGATAACTGGTTGCCGAGGATA ATCTCCATTCGTTTCCTGCCATGGGATGCTAATCGTTAGAGGATACACCTTTGACATTTATGCC ACTAGAATGTTGAATCAATTCAAAGCTTGTACAGGGAGGACTTCTCAATAGGGAAACTTGGATA TCACAAGTAGTGAAAGTTTTCAATAGCTATGTGTTGGTGATTAGGTCAATATTGTGCTCATGCA AATAGCAGAAACAAAATCTCTAACATCAATCTCAAATCCTCGGTCAGATCATGTACTGCCCAAT TGCTCACTCAATACTGGATTAAAGCAGTAAGCAGCTTGGGAGGTGAGGGAGGATTACATAATAT TGAGATATATAAATCATTTGCAGAGAACTCACATGATACATCCGCGCTTGTGAAACATTATTCC TTACATGTATAACTTTTCTGTGACTAGCCTTTGAGTCCTTCTCTTCCTTCAGGCACTTATATTT CTTCCTGGCCAAGCACCCACGCATCACTGCAGACGCATACAGAAGCACATGATTAGATGGATGT GCTATATATTGCAACATGATGTCACTAAAGCCTTCTCACAACTCTTAAAGTACCTGATTGTAGA AGAACAACATATTTGAGCTGATCAATAAACATGGTAGCTGCAATTCGACGCCTAGCATACTTCT GTATGAGAACAGATGCCTTCCATCTCTTTACAAGATGATCAAAGTGAACTCTTGCCTTTTCACC TCTTATAACTGCAAATTTGCAAGGCAAAAATGTTAGACCAAATATCTGGCATCTCCGAACTGAT AACTAAAGCCAGGGAGTGGTTTGAAAGTCAAACATCCCACACATGCCAGAAGGTCAATTTATTA GGAATATTAAAAACTAAAAACATTAGAAAAAATAAAGAGAATTACATGATTGCAAAGTCATTGC TCCTTTCTTCAGTCCCTGGTATTCTTGTCTAGTACACAACCCACGGAAGTTCTTCTGAATCCGA AGGGCTCCATGGAGCATCCGATTCTTAGCATTTTCCAGTGCAGCAACCTACAAGTTATCAATGA GAACGACAATCCATATCAAGCCAGTGTGTGCTATTGGACTGTTGAAGTGTATTTTATCCAAAAA TGTAAGAATCGTTGTACCTGTCCTGTACGAAGAAACAATTTTGTATAGCCAACTTGATACATTT CTGGTGGAATATTGAACTGTTGTAATACAGCAACCGAAATACTAAGAGGATCCTGCGATGCAAT GGAACGCAGGAGAAGACACCCATATCTGCAGATTATAAAAACAAAAATGGAATTTCGAAATCAG CTAGTACACTAGTACTGAACATTGTAAACAAGTATGCTCATGAAGTCTGATTCTGCAAACTAGC AACCTTTCAGCAAACTGTTGGTGAGTCATCCTAGTTGGATAGCCTGCTCTTGATATCCGCACAA CTTCGAGCACCCCACAACACTTAAGCTGGTGTGAAACAAGATCATGCTCAAATAGCATGGGACG TTGTTTGCTATTTGGCTGGATGCATCGAATGAAATGAGGAGTTGTGTTCTCCAATTGCTGCATC AGCTTGAACAGTTGAGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.162033209

Conservation Information
Conserved circRNAs	NA
PMCS	0.162033209

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							22491961-22490325(+)
22491991-22490265(-)
22490292-22491936(-)
						
					

						Potential amino acid sequence
						
							MRSCVLQLLHQLEQLSLQRGELLLPCLFHRFHFGLIF*(+)
MQQLENTTPHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERY
GCLLLRSIASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQK
NFRGLCTRQEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQL
KYVVLLQSVMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITEL
QGRVSKAEAALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQL
ENTTPHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLL
LRSIASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRG
LCTRQEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVV
LLQSVMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRV
SKAEAALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQLENTT
PHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLLLRSI
ASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRGLCTR
QEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVVLLQS
VMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRVSKAE
AALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQLENTTPHFI
RCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLLLRSIASQD
PLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRGLCTRQEYQ
GLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVVLLQSVMRG
CLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRVSKAEAALR
DKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQ(-)
MEEAALLSAGSTVQADAAIGEHNSSFHSMHPAK*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	22491961-22490325(+) 22491991-22490265(-) 22490292-22491936(-)
Potential amino acid sequence	MRSCVLQLLHQLEQLSLQRGELLLPCLFHRFHFGLIF(+) MQQLENTTPHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERY GCLLLRSIASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQK NFRGLCTRQEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQL KYVVLLQSVMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITEL QGRVSKAEAALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQL ENTTPHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLL LRSIASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRG LCTRQEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVV LLQSVMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRV SKAEAALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQLENTT PHFIRCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLLLRSI ASQDPLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRGLCTR QEYQGLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVVLLQS VMRGCLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRVSKAE AALRDKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQAQLFKLMQQLENTTPHFI RCIQPNSKQRPMLFEHDLVSHQLKCCGVLEVVRISRAGYPTRMTHQQFAERYGCLLLRSIASQD PLSISVAVLQQFNIPPEMYQVGYTKLFLRTGQVAALENAKNRMLHGALRIQKNFRGLCTRQEYQ GLKKGAMTLQSFIRGEKARVHFDHLVKRWKASVLIQKYARRRIAATMFIDQLKYVVLLQSVMRG CLARKKYKCLKEEKDSKASHRKVIHVRNNVSQARMYHETNGDYPRQPVITELQGRVSKAEAALR DKEEENEMLKQQLDQYEKKWSEYEAKMKSMEEAWKKQLSSLQ(-) MEEAALLSAGSTVQADAAIGEHNSSFHSMHPAK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0562800_circ_g.3

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