Detail information of 5_circ_ag.6


General Information
CircRNA Name 5_circ_ag.6
ID in PlantcircBase ath_circ_041448
Alias NA
Organism Arabidpsis thaliana
Position chr5: 15377433-15381265  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 5_circ_ag.20 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGCTTGGGGGCTT
GTAGGCAATGAAACTGATGCATTGGACTTGACGGGTaaaaagaacacagacaataggaaatgaa
atgagcagagataattcataagaatgttttagaaaagaaattaagcttcggtgaagcttggggg
cttgtagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAA
GAAATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACG
GGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAACT
TCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACC
GTCCATCGTAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATAAACACAT
AAGAAAACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCGGT
TCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAAAACGAATAAATAATAATGATTAG
TAGACAAAAGAAAACTTTTGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTTG
TTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATA
GAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAAT
TAATATATCCTATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGATGATATTACC
TTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGG
TGACCGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGG
GGATGTAACCACAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTACTTCTTGTTGTTTCTCT
TCTTCTTTTGCTCGTTTACTTACTGACTTGTTTTCCTACTGGTGTTGTCATCTTTATATAATGA
GAACCCCCTAAAGGCGAAAAGCCCTCATGATCAAAGGGTCCATGATTCATGATAACGTCGTTTA
CTGCCACAGGATTAAGGAAAGGTGTTGACACCCTTATCGGTACGCACCACTAGGATAAGGCCAC
GTGGCAGAAAACTCCATTATCTTATCTTTTCTCTTGTGGGGGAAATGAAGTGAATGTGCGGTTA
CTGGTCTCCACTTGATCGGTTGCTTTTGGCTCCTTTCGTTTGGGAGAAAAGAAACCAGACGCAT
TACCTTAAATTTAATGCTTTTGGTCTTTTGGACCTCTTATTTACCATGTATGATTTAATTTGGC
TTAACACTTTCTTTGGAAATAAGGTCGCATTAAAAAATAGTTATAACAAAATTATTTAAATTTG
ATATTTACATAAATATATTGTATGATATTTATCCGGACAAAAAAAAAAGCTTTAACCATCTCCA
ATATTTGTTTCTATTATTTTCTTTCTGAATATAGAGGAAAAAATATAATAGAGATTTATATTTT
AACTTCAATGGTTCCTCAAAAATTCGTTAGAAAAAATAAATAAGAGAAAAAATAAAAATCTCTA
TTTTTTGCTTTAGAAAAAAAATTAGAAATTTCTATTTTACAAATGAAAATAGAGATGAGTTAGA
GTTAAATAAATACAAAAATAGAGTATATAAATAAAAATAGAGATAGATTCGAGATGCTCTTAAA
AATATTCATTACTCTTTCCGTTTTATTAATATCAATTGTTAAGATTTTTCAGGCAGACTTATAA
ATAAGATTCCATTTCAGACTAATGGAAGTAAACCTATCAAAAGAATTCTAACGTGCTGTAGAGA
GACTCCTTCGTCATCGTCCCTTTTGTGAAAGAGTAAATTAAAGAATCCATAATGAGCATAGTGT
AAGAAGAACCATTTATCTATTAGATATATTCTAGTACTGGTAGACTGTCGATTCTGGATACATC
CTGAAAATCATTTACCACAATAAATTGTCGATAATCTTTTTGTTGGAAAAGTTATATATTATCT
TCAAATGATAATATATTAGTCGACAAAAGAAAAGCGAGACAAAATTTGAATACATTGATTTCGG
TTAATTCAATACTTTCACTTCATTTTTAGCAAATAGTACTTTTATTTCTGATTTTTATGTGGCT
AGGATAAAAGCAAAACCTTACTGGTTGGAGAGAGTAAATATTTGAGTCGATACTAACAACAACT
ACATCATGCAAGATATGTTTGTGGGACAAAGAGACCGAGCGAACAAACGAAACGGCAAAACCAT
CATCTACATGTATCAAGTGCGCGGTAAACCCCTCATGGAAGAATTTCCAAGAAAACCTCCCAAA
GTCCATGGTATCTTCTATATGAGGTAATGCACGCTGCCTCTAGATCAACAAGTAATATCAGCTC
ACGATTATCTTGCGACTCTGATCACATCACAATAACAATGGGGAACCCACATACGCAACCGTTC
TCCTTGGAGTACCATGCCATTGCACTTACGGCCCCCTCAAGCACAAATATGGCACCTCAAGCTG
ATTTCCACCATGCAAACTTGAGTATGTAATCAAAGGTGTAGAACGGAGTCAAGAACTCATCTTA
AAGTCACATAAAACTATGGTCATGCACTCATGGATCACGACTACTACCTTCAGGCTCACAAATT
AATGCCCCCTTTTCAATCATATATATGAGAAGAAACGTGTACAAAGTACACATTAACTGGTCAC
GAAAAAACTTTCGTGTAGGGAAAAGGATCACAAGGTCCACTCCACTCCGCACCTCAGCTAAATA
AATCATTTTTCGAAAGTGAGATAGTCTTAACTCTTAAGTCTTAACCCATCCATCTAAGTTACTA
GTTTCTGTCTTTTATAAGTCATTTTGTTTCTTTTTCTTGGATTTTAATTGAAGCCAAAATGTGT
GAATTAAATCCGGGAGATGGAAAAAATGTTCGATAATTTGAATTATTATTTTTATATGTATTTT
GTATTTGAATCATGAATTTTTTATATTTCGTTTGCATAGAAGAATCCAAAAACATATGATTTTT
TGTCAAAACAAAAACTTAAAACCAAACATATAGTAGATGCGACGTTTTCATTATCATTTGGAAT
CTAGTTTTATTTAGAACTTTTTGGGAACGTTAACTACTTTTCCTTCTAAATAACTGTTTCAGCT
TTTAATGCATAACCAATGATCAAATTTAACGTAAACAAAATTTCCAAAATTTAGTAACTTCATG
CTTGACAAATTTCAGTCTTTGTCGATCCTTGCTTTATGTAATGCTATTTCTTGACTTAATATCC
CACTTAGGGGTTTGGAATACATGTTTTATGTTTATAATTTTAAAAGATGCATTTGAATTTTCTG
TATATACTACCTTTTCCAAATCTCCAATGGCTATGTCATCTGAAAAATGGTTACACTCCCTTAC
ATAAACTTTTCTCTAAATATCGAGGTTTGATTGATTGCTTTCATGTGCAAAATTTCTTAAAACA
ATGTAGCAAGTTTTTCTTTTTTTATTAGAGTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAGAA
TTATGAGGATAATTTAAAGGAGCCACAATGTTGTTTAAAGGAGCTAAACGAAAAATAAGATTTC
AAAGATTTAAGGGCAAAAATGAAATGAAATGATAACTATAATTATAGAGAAACTGATAGGAATA
ACATTTTCACTTTCAAACAATAGTTCCTCAACTGTTAAGTCGGCAAATAATTTCTTAAATTTGC
ATTGACCACATAGAAATGGGTTCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAAGC
TTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.347556798
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017