Detail information of Os03g0808350_circ_g.2


General Information
CircRNA Name Os03g0808350_circ_g.2
ID in PlantcircBase osa_circ_022372
Alias Os03circ30497
Organism Oryza sativa
Position chr3: 33791521-33791969  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os03g0808350
Parent gene annotation Hypothetical protein. (Os03t0808350-00)
Parent gene strand +
Alternative splicing Os03g0808350_circ_g.1
Support reads 2/2
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA:0
Os03t0808350-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGATTTTTGCAAAGCCTAAACGGACAACAAGAATTAGATGAAAAATCTGCAAACTTGAG
AGTCATAAATAAATTCATAATCAGTTATTGAGTTACattttggagtacatagcagttgctgcta
agcactattcagtaatcagatatgctttctaaaagataaaactgcactatgcaaaagcatgatt
tgcagagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 449
Transcript exons: 33791521-33791969
ATTTTGGAGTACATAGCAGTTGCTGCTAAGCACTATTCAGTAATCAGATATGCTTTCTAAAAGA
TAAAACTGCACTATGCAAAAGCATGATTTGCAGAGCATGTAATGGAGAGAGAAAAAAAGGCTTT
TAAAAGCTGGATTCTGACAAAGACCGCTCTCCTAACGTTGCATGATTGAGTAGTGGTTAACTCA
TCTGATGTCGCATGCCTACATCCAAAAAGGATAGATAGTACTAGTGCTACTCTGAACATTTTCT
TGCAAGAACAGATACCCTGCTACTCTGCTTTGAGTTAATCACCAAGAACAAAGTTGGATTCCCT
TTGCTCGGAATCAAAATCTATCAGCTATAATTTCAGATTTTTGCAAAGCCTAAACGGACAACAA
GAATTAGATGAAAAATCTGCAAACTTGAGAGTCATAAATAAATTCATAATCAGTTATTGAGTTA
C

Genomic sequence ATTTTGGAGTACATAGCAGTTGCTGCTAAGCACTATTCAGTAATCAGATATGCTTTCTAAAAGA
TAAAACTGCACTATGCAAAAGCATGATTTGCAGAGCATGTAATGGAGAGAGAAAAAAAGGCTTT
TAAAAGCTGGATTCTGACAAAGACCGCTCTCCTAACGTTGCATGATTGAGTAGTGGTTAACTCA
TCTGATGTCGCATGCCTACATCCAAAAAGGATAGATAGTACTAGTGCTACTCTGAACATTTTCT
TGCAAGAACAGATACCCTGCTACTCTGCTTTGAGTTAATCACCAAGAACAAAGTTGGATTCCCT
TTGCTCGGAATCAAAATCTATCAGCTATAATTTCAGATTTTTGCAAAGCCTAAACGGACAACAA
GAATTAGATGAAAAATCTGCAAACTTGAGAGTCATAAATAAATTCATAATCAGTTATTGAGTTA
C
Conservation Information
Conserved circRNAs osi_circ_013793*
PMCS 0.2269415
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017