Detail information of BGIOSGA009599_circ_g.1


General Information
CircRNA Name BGIOSGA009599_circ_g.1
ID in PlantcircBase osi_circ_013793
Alias Chr03:36679876_36680333(ZS97RS2), Chr03:36832759_36833216(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 38158399-38158856  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA009599
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCAGATTTTTGCAAAGCCTAAACGGACAACAAGAATTAGATGAAAAATCTGCAAACTTGAG
AGTCATAAATAAATTCATAATCAGTTATTGAGTTACgtgagtaacattttggagtacatagcag
ttgctgctaagcactattcagtaatcagatatgctttctaaaagataaaactgcactatgcaaa
agcatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGTAACATTTTGGAGTACATAGCAGTTGCTGCTAAGCACTATTCAGTAATCAGATATGCTT
TCTAAAAGATAAAACTGCACTATGCAAAAGCATGATTTGCAGAGCATGTAATGGAGAGAGAAAA
AAAGGCTTTTAAAAGCTGGATTCTGACAAAGACCGCTCTCCTAACGTTGCATGATTGAGTAGTG
GTTAACTCATCTGATGTCGCATGCCTACATCCAAAAAGGATAGATAGTACTAGTGCTACTCTGA
ACATTTTCTTGCAAGAACAGATACCCTGCTACTCTGCTTTGAGTTAATCACCAAGAACAAAGTT
GGATTCCCTTTGCTCGGAATCAAAATCTATCAGCTATAATTTCAGATTTTTGCAAAGCCTAAAC
GGACAACAAGAATTAGATGAAAAATCTGCAAACTTGAGAGTCATAAATAAATTCATAATCAGTT
ATTGAGTTAC
Conservation Information
Conserved circRNAs osa_circ_022371 osa_circ_022372*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021