Detail information of AT2G02800_circ_g.1


General Information
CircRNA Name AT2G02800_circ_g.1
ID in PlantcircBase ath_circ_012610
Alias 2:797672-798720
Organism Arabidpsis thaliana
Position chr2: 797672-798720  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02800
Parent gene annotation Probable serine/threonine-protein kinase PBL3
Parent gene strand -
Alternative splicing AT2G02800_circ_g.2 AT2G02800_circ_g.3
Support reads 1/1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02800.1:4
AT2G02800.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAGGTAAAGACTCAACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAAC
GACTTGTCTTGCTAGAAACTCTTGAGCTCAATGAAGctgttgctacatattccggggcagcata
tccgtgagtacccatgacttgtgtggacacatgagtcttgtcaccggtaggacctgctttagct
agaccgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 735
Transcript exons: 797672-797795,797899-798035,798148-798283,798383-798720
CTGTTGCTACATATTCCGGGGCAGCATATCCGTGAGTACCCATGACTTGTGTGGACACATGAGT
CTTGTCACCGGTAGGACCTGCTTTAGCTAGACCGAAGTCTGAAAGTTTACTGTTGAATTCCGCA
TCAAGTAGAATGTTAGCAGCTTTAAAGTCTCTGTATATCACTTGCGATTTCGCATCATGGAGAA
AAGTAAGTCCTTTGGCAGCCCCTATTGCAACTTTCATCCTTATAGCCCACGTAAGTGGCTGAGC
GCCACGTCTAAAAAGATGATTCTCCAAGCTTCCTTTTGGCATGAACTCGTATACCAGTAACCGG
TTTTCTCCCTCTACACAATACCCAACAAGTTTGACGAGATTTGGGTGACTAAGCTGACCAAGAT
AGTTCACTTCAGTCAACCACTCTTTATGACCTTGATAACCTTCAGTTTTAAGCTTCTTAACCGC
AACAACAATTCCAGAACCCGGTTTTGAAGCAGTTAAAGTAGTTCCATCAATCCACCCTTTAAAC
ACATAGCCAAAACCTCCTTCACCTAAAAGACTATCGGGTCGAAAGTTCCTCGTAGCGTTCTTGA
GCTCGTTAAAGGTGAAAGCTTTAAGATTTGGTGATGACAAAATCTCTCCTTCTGTTCTTGGTGT
AGGTAAAGACTCAACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAACGACTT
GTCTTGCTAGAAACTCTTGAGCTCAATGAAG

Genomic sequence CTGTTGCTACATATTCCGGGGCAGCATATCCGTGAGTACCCATGACTTGTGTGGACACATGAGT
CTTGTCACCGGTAGGACCTGCTTTAGCTAGACCGAAGTCTGAAAGTTTACTGTTGAATTCCTGT
GATTAAGATCGATATAGAAGCTAGTTAGAAAATAGAATCAAATCATCACGAATAAGGGGTTAAA
GAGAGGCTACTCGTCAGGTTTCTCAGGTTTATTACCGCATCAAGTAGAATGTTAGCAGCTTTAA
AGTCTCTGTATATCACTTGCGATTTCGCATCATGGAGAAAAGTAAGTCCTTTGGCAGCCCCTAT
TGCAACTTTCATCCTTATAGCCCACGTAAGTGGCTGAGCGCCACCTGGAAGATCAAAAAAGCAT
TTGACAAGGATTACAAAACAAGAGTATAAAGAAGAAGATAAGATTTGCTGATTCTGAAAAGGAT
TGCTTTGGTAATCACAGGTTTTACATACGTCTAAAAAGATGATTCTCCAAGCTTCCTTTTGGCA
TGAACTCGTATACCAGTAACCGGTTTTCTCCCTCTACACAATACCCAACAAGTTTGACGAGATT
TGGGTGACTAAGCTGACCAAGATAGTTCACTTCAGTCTAAAACCAAACAAATCCAAAAAAAAAG
TATGTCAGCAAACAATGTTAACACCATTCATGATCAAAATCAATAAGAGAATGAAGGAAACAAA
GACGTACCAACCACTCTTTATGACCTTGATAACCTTCAGTTTTAAGCTTCTTAACCGCAACAAC
AATTCCAGAACCCGGTTTTGAAGCAGTTAAAGTAGTTCCATCAATCCACCCTTTAAACACATAG
CCAAAACCTCCTTCACCTAAAAGACTATCGGGTCGAAAGTTCCTCGTAGCGTTCTTGAGCTCGT
TAAAGGTGAAAGCTTTAAGATTTGGTGATGACAAAATCTCTCCTTCTGTTCTTGGTGTAGGTAA
AGACTCAACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAACGACTTGTCTTG
CTAGAAACTCTTGAGCTCAATGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.325770349
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020