Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT2G02800_circ_g.2 |
ID in PlantcircBase | ath_circ_012611 |
Alias | At_ciR2304, Ath_circ_FC1142, Ath_circ_FC1143 |
Organism | Arabidpsis thaliana |
Position | chr2: 798148-798720 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT2G02800 |
Parent gene annotation |
Probable serine/threonine-protein kinase PBL3 |
Parent gene strand | - |
Alternative splicing | AT2G02800_circ_g.1 AT2G02800_circ_g.3 |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT2G02800.1:2 AT2G02800.2:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.24777215 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
798185-798150(-) |
Potential amino acid sequence |
MPKGSLENHLFRPSLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFN ELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEV NYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRPSLSSRVSSKTSRSTVPSSLSI NSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLT ASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKG SLENHLFRPSLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKN ATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLG QLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chen et al., 2017a |