Detail information of AT2G02800_circ_g.2


General Information
CircRNA Name AT2G02800_circ_g.2
ID in PlantcircBase ath_circ_012611
Alias At_ciR2304, Ath_circ_FC1142, Ath_circ_FC1143
Organism Arabidpsis thaliana
Position chr2: 798148-798720  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G02800
Parent gene annotation Probable serine/threonine-protein kinase PBL3
Parent gene strand -
Alternative splicing AT2G02800_circ_g.1 AT2G02800_circ_g.3
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02800.1:2
AT2G02800.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAGGTAAAGACTCAACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAAC
GACTTGTCTTGCTAGAAACTCTTGAGCTCAATGAAGgtctaaaaagatgattctccaagcttcc
ttttggcatgaactcgtataccagtaaccggttttctccctctacacaatacccaacaagtttg
acgagatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCTAAAAAGATGATTCTCCAAGCTTCCTTTTGGCATGAACTCGTATACCAGTAACCGGTTTTC
TCCCTCTACACAATACCCAACAAGTTTGACGAGATTTGGGTGACTAAGCTGACCAAGATAGTTC
ACTTCAGTCTAAAACCAAACAAATCCAAAAAAAAAGTATGTCAGCAAACAATGTTAACACCATT
CATGATCAAAATCAATAAGAGAATGAAGGAAACAAAGACGTACCAACCACTCTTTATGACCTTG
ATAACCTTCAGTTTTAAGCTTCTTAACCGCAACAACAATTCCAGAACCCGGTTTTGAAGCAGTT
AAAGTAGTTCCATCAATCCACCCTTTAAACACATAGCCAAAACCTCCTTCACCTAAAAGACTAT
CGGGTCGAAAGTTCCTCGTAGCGTTCTTGAGCTCGTTAAAGGTGAAAGCTTTAAGATTTGGTGA
TGACAAAATCTCTCCTTCTGTTCTTGGTGTAGGTAAAGACTCAACACTGCTGTAAGAATTTATG
CTTAAGCTTGAAGGAACTGTGGAACGACTTGTCTTGCTAGAAACTCTTGAGCTCAATGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.24777215
Functional Information
Coding potential Y
Potential coding position 798185-798150(-)
Potential amino acid sequence MPKGSLENHLFRPSLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFN
ELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEV
NYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRPSLSSRVSSKTSRSTVPSSLSI
NSYSSVESLPTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLT
ASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKG
SLENHLFRPSLSSRVSSKTSRSTVPSSLSINSYSSVESLPTPRTEGEILSSPNLKAFTFNELKN
ATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLG
QLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chen et al., 2017a