Detail information of Os10g0536450_circ_g.1


General Information
CircRNA Name Os10g0536450_circ_g.1
ID in PlantcircBase osa_circ_007827
Alias Os10circ08830/Os_ciR674
Organism Oryza sativa
Position chr10: 20890580-20890904  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, circseq_cup, find_circ
Parent gene Os10g0536450
Parent gene annotation Hypothetical protein. (Os10t0536450-00)
Parent gene strand -
Alternative splicing Os10g0536400_circ_g.2 Os10g0536400_circ_g.3 Os10g0536400_circ_g.4 Os10g0536400_circ_g.5 Os10g0536450_circ_g.2 Os10g0536450_circ_g.3 Os10g0536450_circ_g.4
Support reads 6/41/24/33
Tissues leaf/root/root/shoot, root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os10t0536400-01:1
Os10t0536450-00:1
Os10t0536400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    Yes
PCR primers for FL    F: GGACTGGAGGGAGGATACAT
R: CAGTCCAAGGCTCTCCGATA
Sequences
Splice junction sequence   CGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAACCCGCAACCC
GGTGCTCTCGTCATCAACATTGGCGACCAACTTCAGggagatcatcggcacgtactgcacagag
gtaagagagctagggttcaggctatacgaggcgatatcggagagccttggactggagggaggat
acatgagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 160
Transcript exons: 20890580-20890649,20890815-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAACCCGCAACCCGGTG
CTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 171
Transcript exons: 20890580-20890647,20890802-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAACCC
GCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 204
Transcript exons: 20890580-20890731,20890853-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGC
GACCAACTTCAG

Transcript length: 237
Transcript exons: 20890580-20890690,20890779-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGAACGCCCTCACCATCCT
CCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAAC
CCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 248
Transcript exons: 20890580-20890662,20890740-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGCCGGAGCTCACCTATGGCCTCCCCGCGCACACCGACCCCAACGCC
CTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGA
TTGCCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 284
Transcript exons: 20890580-20890676,20890718-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGCTACTACCCACAGTGCCCGGAGCCGGAGCTC
ACCTATGGCCTCCCCGCGCACACCGACCCCAACGCCCTCACCATCCTCCTCATGGACGACCAGG
TCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAACCCGCAACCCGGTGCTCT
CGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 287
Transcript exons: 20890580-20890724,20890763-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCGCGCACACCGACCCCAACGCCCTCACCATCCTCCTCATGGACGACC
AGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAACCCGCAACCCGGTGC
TCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 300
Transcript exons: 20890580-20890809,20890835-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACAC
CGACCCCAACGCCCTCACCATCCTCCTCATGGACGACCCGACGGCAAGTGGATTGCCGTCAACC
CGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 302
Transcript exons: 20890580-20890669,20890693-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGAGCAGGAGCAGCACATGGCGGTGAACTACTACCCACAG
TGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACACCGACCCCAACGCCCTCACCATCC
TCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCCGTCAA
CCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 313
Transcript exons: 20890580-20890669,20890682-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGGACGTTGGGGGAGCAGGAGCAGCACATGGCGGTGAACT
ACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACACCGACCCCAACGC
CCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGG
ATTGCCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 316
Transcript exons: 20890580-20890736,20890746-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTGCCCGCTCACCTATGGCCTCCCCGCGCACACCGACCCCAA
CGCCCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAG
TGGATTGCCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAACTTCAG

Transcript length: 325
Transcript exons: 20890580-20890904
GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACAC
CGACCCCAACGCCCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAAC
GACGGCAAGTGGATTGCCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAAC
TTCAG

Genomic sequence GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGACTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACAC
CGACCCCAACGCCCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAAC
GACGGCAAGTGGATTGCCGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAAC
TTCAG
Conservation Information
Conserved circRNAs osi_circ_002924* osi_circ_008650
PMCS 0.577567615
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA