Detail information of BGIOSGA033357_circ_g.3


General Information
CircRNA Name BGIOSGA033357_circ_g.3
ID in PlantcircBase osi_circ_002924
Alias 10:19878758|19879082
Organism Oryza sativa ssp. indica
Position chr10: 19878758-19879082  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033357
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033357_circ_g.1 BGIOSGA033357_circ_g.2 BGIOSGA033357_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033357-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACCAGGTCGCCGGCCTGCAGGTCCTCAACGACGGCAAGTGGATTGCGGTCAACCCGCAACCC
GGTGCTCTCGTCATCAACATTGGCGACCAACTTCAGggagatcatcggcacgtactgcacagag
gtaagagagctagggttcaggctatacgaggcgatatcggagagccttgggctggagggaggat
acatgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGATCATCGGCACGTACTGCACAGAGGTAAGAGAGCTAGGGTTCAGGCTATACGAGGCGATA
TCGGAGAGCCTTGGGCTGGAGGGAGGATACATGAGGGAGACGTTGGGGGAGCAGGAGCAGCACA
TGGCGGTGAACTACTACCCACAGTGCCCGGAGCCGGAGCTCACCTATGGCCTCCCCGCGCACAC
TGACCCCAACGCCCTCACCATCCTCCTCATGGACGACCAGGTCGCCGGCCTGCAGGTCCTCAAC
GACGGCAAGTGGATTGCGGTCAACCCGCAACCCGGTGCTCTCGTCATCAACATTGGCGACCAAC
TTCAG
Conservation Information
Conserved circRNAs osa_circ_007827*
PMCS
Functional Information
Coding potential Y
Potential coding position 19878888-19878809(-)
19878853-19878949(+)
19878932-19878949(+)
Potential amino acid sequence MCCSCSPNVSLMYPPSSPRLSDIASYSLNPSSLTSVQYVPMISLKLVANVDDESTGLRVDRNPL
AVVEDLQAGDLVVHEEDGEGVGVSVRGEAIGELRLRALWVVVHRHVLLLLPQRLPHVSSLQPKA
LRYRLV*(-)
MRETLGEQEQHMAVNYYPQCPEPELTYGLPAHTDPNALTILLMDDQVAGLQVLNDGKWIAVNPQ
PGALVINIGDQLQGDHRHVLHRGKRARVQAIRGDIGEPWAGGRIHEGDVGGAGAAHGGELLPTV
PGAGAHLWPPRAH*(+)
MASPRTLTPTPSPSSSWTTRSPACRSSTTASGLRSTRNPVLSSSTLATNFREIIGTYCTEVREL
GFRLYEAISESLGLEGGYMRETLGEQEQHMAVNYYPQCPEPELTYGLPAHTDPNALTILLMDDQ
VAGLQVLNDGKWIAVNPQPGALVINIGDQLQGDHRHVLHRGKRARVQAIRGDIGEPWAGGRIHE
GDVGGAGAAHGGELLPTVPGAGAHLWPPRAH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021