Detail information of EPlOSAG00000028854_circ_ig.6


General Information
CircRNA Name EPlOSAG00000028854_circ_ig.6
ID in PlantcircBase osa_circ_020683
Alias Os_ciR8677
Organism Oryza sativa
Position chr3: 23800596-23802392  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000028854_circ_ig.1 EPlOSAG00000028854_circ_ig.2 EPlOSAG00000028854_circ_ig.3 EPlOSAG00000028854_circ_ig.4 EPlOSAG00000028854_circ_ig.5 EPlOSAG00000028854_circ_ig.7 EPlOSAG00000028854_circ_ig.8 EPlOSAG00000028854_circ_ig.9
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGTCCACCAAGCTAGAGAAGTAGTTCCTCAAAAATTCTGATGCGCGTCGAACAAAAGTTGT
CTTCAGTTTCTCCAGTTCTGCTCTTTTTTCCCTAACctgggaatgtaggctagtattcctgtct
gccgtacatttctttcattgcgctcgatttgatggcacgcttcatcaataaactggaaatggaa
aattaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGAATGTAGGCTAGTATTCCTGTCTGCCGTACATTTCTTTCATTGCGCTCGATTTGATGGC
ACGCTTCATCAATAAACTGGAAATGGAAAATTAAGACGACATTAATGAGAGTAGATAGACTATG
GATCTCTTCTACATAGATATAATATAGCAGCACATCCTGAACTGAGGGCACTAACCCTGCTGAA
CTGTGTTGATATTCTTGACTCCAAGTCATGAAGTAGTCTGCGAACAAATCCTGCAGCATCAGCT
TTCTGACCGGACAGGTATCGTTCTGTAATCCCATGCATTGAAATGCAACGCAAGGGATCAATCT
TGTATGCCCAATCGACAACCGCATAGAAGTCTTCCTAAAAGAGAAAGGCAAAAGGTGTATTTTG
CAATCAATATGAGGAGGCACTATACTGGATCACAAGCTGCTGCATAGAAAGTTGTATTCCTTTT
GGTTCAAAATTTGTTCCTTTTCTTTGGTTCAATTGTCAATGCAAGCAAAATTAAATCTACCTGG
ATTCCATCGAGTAGTTCTTGAAGAGCATCATTCAATGTACCCAATTCAGCAGATGTATCATCTG
GAAGTATTATTGTCATGTAAGAAAATGAGCATTGACATTATGAATACAACACGGAGGCATATAT
ATTCATCAAGATTCAAGGCAAGCTTTGAGGCAAGCATACCTGGTTTGAGATCATTGCCATCTGG
ATCCATAAGATTCAGGTCATCATCTGGGTCATTTCCCCCTGATCTACTTTTAGCATTCGGAGCA
CCAGCTGGAACAAGGGCAGGTACTTCAAAGCACATAAAATGTGCAAAAAAGGAACTCTGCAAAT
GTAGTACTCATTATTTTGTATACATCCTCAAGCAGATTTTATAGTCAAGTAATGCACTAAAGAA
TAAATGGAATAACCTCATCCACAAGAAGTGGGATAAATATTGTTAGCATCTTTGAATATGCATC
AGATACTGTTGAAGTGTCAGCACTACTGCCATTCTGACCGCCACTATTAGAACCTTCAAGCCAA
ACAGCTGGATTTTTAGGTGCTTTCGTGCTTGCTCGAAGTTCATTGGCGAATTCACGTGCCTAAA
TCAAATTATGGGGAAAGATTACATGTTTAGCTGTTGGAATGGACAAGTTAAAAAAATCAATTAA
CAAGGACCAGATAGAGTGTGTGTACATTCATATGGTATATGTTCACAAATAGTATAGAGAATTC
AAACGCGACATAGAAAACAGAACATATCACAACGAAATACATAGGCAAGATATTAGAGTGCGAA
GAACTGAACATAGACTATATCAAATACCAAAGTCATTCAATGTTTTTATTCTGACCTCTCGACG
AAGCAATAAATTAAGAGAATGACAGTATGCTTTCCTTAAGGGGCCTAAACAGCTCTTGTCCAGA
CTCTGCACAATGAGCAATGGGAAATGAGAGAGTGACAGAGTTTATAATATGTAATGAGCACAGA
ACAAAAGTTAAGAGGTTGGAACCTTCAAGTGCTGCAGAAGTCGGGCATAAGTTCTGCATTTGTA
TCTTAGGTCTGCATGATCAGGCCGCTTCAATTGCCCTCGCTACTTTCAGTTAAAAGAGAACTCT
CTGAGTCATCTCAGAAAACAAAAATAGAAGGTAATAAATTGCTGCGAAGAATGGGTCTGTGAAG
AAACCTGAGAAAAGTAGCTTTTGTCACTTATCATGAAGTCCACCAAGCTAGAGAAGTAGTTCCT
CAAAAATTCTGATGCGCGTCGAACAAAAGTTGTCTTCAGTTTCTCCAGTTCTGCTCTTTTTTCC
CTAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.393833323
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015