Detail information of EPlOSAG00000028854_circ_ig.5


General Information
CircRNA Name EPlOSAG00000028854_circ_ig.5
ID in PlantcircBase osa_circ_020682
Alias Os_ciR2676
Organism Oryza sativa
Position chr3: 23800596-23801678  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000028854_circ_ig.1 EPlOSAG00000028854_circ_ig.2 EPlOSAG00000028854_circ_ig.3 EPlOSAG00000028854_circ_ig.4 EPlOSAG00000028854_circ_ig.6 EPlOSAG00000028854_circ_ig.7 EPlOSAG00000028854_circ_ig.8 EPlOSAG00000028854_circ_ig.9
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTGCCATTCTGACCGCCACTATTAGAACCTTCAAGCCAAACAGCTGGATTTTTAGGTGCTTT
CGTGCTTGCTCGAAGTTCATTGGCGAATTCACGTGCctgggaatgtaggctagtattcctgtct
gccgtacatttctttcattgcgctcgatttgatggcacgcttcatcaataaactggaaatggaa
aattaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGAATGTAGGCTAGTATTCCTGTCTGCCGTACATTTCTTTCATTGCGCTCGATTTGATGGC
ACGCTTCATCAATAAACTGGAAATGGAAAATTAAGACGACATTAATGAGAGTAGATAGACTATG
GATCTCTTCTACATAGATATAATATAGCAGCACATCCTGAACTGAGGGCACTAACCCTGCTGAA
CTGTGTTGATATTCTTGACTCCAAGTCATGAAGTAGTCTGCGAACAAATCCTGCAGCATCAGCT
TTCTGACCGGACAGGTATCGTTCTGTAATCCCATGCATTGAAATGCAACGCAAGGGATCAATCT
TGTATGCCCAATCGACAACCGCATAGAAGTCTTCCTAAAAGAGAAAGGCAAAAGGTGTATTTTG
CAATCAATATGAGGAGGCACTATACTGGATCACAAGCTGCTGCATAGAAAGTTGTATTCCTTTT
GGTTCAAAATTTGTTCCTTTTCTTTGGTTCAATTGTCAATGCAAGCAAAATTAAATCTACCTGG
ATTCCATCGAGTAGTTCTTGAAGAGCATCATTCAATGTACCCAATTCAGCAGATGTATCATCTG
GAAGTATTATTGTCATGTAAGAAAATGAGCATTGACATTATGAATACAACACGGAGGCATATAT
ATTCATCAAGATTCAAGGCAAGCTTTGAGGCAAGCATACCTGGTTTGAGATCATTGCCATCTGG
ATCCATAAGATTCAGGTCATCATCTGGGTCATTTCCCCCTGATCTACTTTTAGCATTCGGAGCA
CCAGCTGGAACAAGGGCAGGTACTTCAAAGCACATAAAATGTGCAAAAAAGGAACTCTGCAAAT
GTAGTACTCATTATTTTGTATACATCCTCAAGCAGATTTTATAGTCAAGTAATGCACTAAAGAA
TAAATGGAATAACCTCATCCACAAGAAGTGGGATAAATATTGTTAGCATCTTTGAATATGCATC
AGATACTGTTGAAGTGTCAGCACTACTGCCATTCTGACCGCCACTATTAGAACCTTCAAGCCAA
ACAGCTGGATTTTTAGGTGCTTTCGTGCTTGCTCGAAGTTCATTGGCGAATTCACGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.343398299
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015