Detail information of BGIOSGA015219_circ_g.2


General Information
CircRNA Name BGIOSGA015219_circ_g.2
ID in PlantcircBase osi_circ_005407
Alias 4:16030240|16030631
Organism Oryza sativa ssp. indica
Position chr4: 16030240-16030631  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015219
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015219_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015219-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCAACGTCGGACTTTTGTGGGACGCATTTCTTGCGCGAAACAGCACACTCGTTGAACTCATC
GACCACAGTGTTCTCAAACAGATCTCCACATTTGATcagtcatcttgatagtgcaggaactcat
tgtcatggttatagaggatcgcgggttgtgctgggtcctgcacaaaccgctgtatggctgatct
ggtgaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTCATCTTGATAGTGCAGGAACTCATTGTCATGGTTATAGAGGATCGCGGGTTGTGCTGGGT
CCTGCACAAACCGCTGTATGGCTGATCTGGTGAAGAAGCCGGAGTCGGGGGTGCGAATTCTCCA
TGTCAAGTTCGCTATAAGTTTGTCTCCCTCGACACGGAACTCGTGAAGTTGGCAATCGAATGTG
TCGAAAGTGGGATTGAGGCCACTTGAAATGTACCACTTGCCGTTGAAATCAGCCATGTTGAAGT
TCTTGACAAGGGCGGATGGATCAGGGACTGGGAACTCGCCAACGTCGGACTTTTGTGGGACGCA
TTTCTTGCGCGAAACAGCACACTCGTTGAACTCATCGACCACAGTGTTCTCAAACAGATCTCCA
CATTTGAT
Conservation Information
Conserved circRNAs osa_circ_023571*
PMCS
Functional Information
Coding potential Y
Potential coding position 16030460-16030333(+)
Potential amino acid sequence MYHLPLKSAMLKFLTRADGSGTGNSPTSDFCGTHFLRETAHSLNSSTTVFSNRSPHLISHLDSA
GTHCHGYRGSRVVLGPAQTAVWLIW*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021