Detail information of BGIOSGA015219_circ_g.1


General Information
CircRNA Name BGIOSGA015219_circ_g.1
ID in PlantcircBase osi_circ_014283
Alias Chr04:18978281_18978673(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16030239-16030631  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015219
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015219_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015219-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCAACGTCGGACTTTTGTGGGACGCATTTCTTGCGCGAAACAGCACACTCGTTGAACTCATC
GACCACAGTGTTCTCAAACAGATCTCCACATTTGATccagtcatcttgatagtgcaggaactca
ttgtcatggttatagaggatcgcgggttgtgctgggtcctgcacaaaccgctgtatggctgatc
tggtgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGTCATCTTGATAGTGCAGGAACTCATTGTCATGGTTATAGAGGATCGCGGGTTGTGCTGGG
TCCTGCACAAACCGCTGTATGGCTGATCTGGTGAAGAAGCCGGAGTCGGGGGTGCGAATTCTCC
ATGTCAAGTTCGCTATAAGTTTGTCTCCCTCGACACGGAACTCGTGAAGTTGGCAATCGAATGT
GTCGAAAGTGGGATTGAGGCCACTTGAAATGTACCACTTGCCGTTGAAATCAGCCATGTTGAAG
TTCTTGACAAGGGCGGATGGATCAGGGACTGGGAACTCGCCAACGTCGGACTTTTGTGGGACGC
ATTTCTTGCGCGAAACAGCACACTCGTTGAACTCATCGACCACAGTGTTCTCAAACAGATCTCC
ACATTTGAT
Conservation Information
Conserved circRNAs osa_circ_023571
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021