Detail information of BGIOSGA015476_circ_g.1


General Information
CircRNA Name BGIOSGA015476_circ_g.1
ID in PlantcircBase osi_circ_015141
Alias Chr04:9574430_9579174(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 7614902-7619646  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015476
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015476_circ_g.2 BGIOSGA015476_circ_g.3 BGIOSGA015476_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA015476-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGAGTAAAGCCACCTGCCGAAGACTTTTTAGAATCATGCCCACAAAGGCAACGCATATTACT
CACTGCAATCATGTCATCAGCAGATAATCCTGCGAGccttgaatacccatcatcagagtctcga
ggcctggcccatgtgccacctgtccttctagatctcatggattgagctggctggtgagctgggc
ttgtttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGAATACCCATCATCAGAGTCTCGAGGCCTGGCCCATGTGCCACCTGTCCTTCTAGATCTC
ATGGATTGAGCTGGCTGGTGAGCTGGGCTTGTTTGGGTAGATGCACTTGGAATTCCCCGGAAAC
TAGGACTAGGGTCATTCAAACAGTGATACTCATCTTTTGGTAGCTCACCCTTGCTAAGTTTCTC
AATCAACTCCTGCAATAAAAAGGCAAGAAACATATTCATGTAAATGCAAAAACAAAACTTCCTA
AAAGAAAGTAAATTACAGCAAAGCACATATCACTTGCTACAACTTTAACTGCGCATTTCAGAGA
ATTGCAACAATAGTGTATAATTTTATCAGAAAGCTACAACTTTATGTCTTCCATACACAAATGA
AATATTCATGTAGTAATAAGTTGGGCCCACATGTCATACACATATGGGAAAATTGCAGTTATTT
GATAAAATCCACTGCTAAAGTTGCAATTTATAAAATAGCCGGTTAAAGTTGTAGCAAAGTGATA
GTCTCGACCAAATAATTGCAGTTTTCTGAAATTTAATCCTAAAAAAATGATAGCTGCAGCAATG
GAAGGACAAAAATATATTTCCATTGTATGATAACTTTACAGTTGCACCTTGCCGGTATTAATAT
CTGCTAACATAATAGCAAAACAAATGAAAGCTTCAATACTACTAACTAACATCAGGGCCACTTA
TTAATTTTGCCAGCACAAACTGTCAAATCATAACAGAACTAGCTTTGCTTTTCTCAATAACTGA
AAGTGAAGGACTATCTAAAGAAAAAAGGAACAACAGATATGCGTCATACTGATTCTCTACTAGT
ACATGTCTTACTGTAAGTTTTATATAAACTAATAAAAGCCATATCCACAGAATGAGTTAGCTCA
AATACTTAATAAGAGGCTGCCTCAGTGTTCCACCCTCAATGATTTGCAATAATTTAAAAGGCAA
AAATTTCATCCTCTTTCACACTACCAATGCCAACTTTTGGCATAGAAGGTTGCCATTCTGTAAC
CATTTGCCATGTGACCTTAAGAAAATAAAAAATCAGTTCCTACTGAGAGGAAGATTGAAGTGTT
CATGAATATCTTTTCTTTTTTTGTGTTTGAAAGAACAGAAATGATCATTTTGCCAATCTAACTT
CTTTCTCCCTAAAGGAAACATAATATCCAATTTGGTCCCTCAAGTATGACTCCAGAATAACTAG
CCTTTGATAATTGATTTCATCAGAGTCCTCAAAGTTTGCCCATTTGTCCATTAGTTCAAAATGA
TCCTTGAGAGGTAAAACACCATGCGTGTAAAACCAACTCAACAGATGGCAAACCTTATGACAAT
AATATAATATCATATCGGGCGCCCACTGCAATGGCCCACAAAGATACAAGGGCATAATGGGATG
ATCCAATCAATTCTCTTCCCTTTTTCTTTCATTGTGTTGTATTTTTTCACCAATAGTAGCCATT
TTCTTCGTTGGCTTTGCCCATTTGGCGCTTTATGCCAATTTGAATGCTAAAAAACAAAGTGACC
CCCAGGGGGGAAACTCACAGGACCAATTTGCTGTTCTCTCTAAAATGAATTTATCAGGATTATG
AAAAGCTATAATTCAGAGCATCAACAAATGATTAAAATTCAGTTTTCAACGAAATTTTCATTGA
ATTAAATAGTATATCGGCATTAAAATTTCAAGTTTATGAATATGAAAATTCGAAGTTCCTTTTT
TAAAAGAATCTTAAATTTTGGATATTTAAAATACTGAATAGAGAATTTAAATGTCGAAATGTAT
GGCTTGAATTAAGAAGTACCATAGAATGTGTAGCACGTTGTTTAACTAAATAGCAGGCCTCACA
TCAAACCCCACAGCACTCCCACCGTGTTACCCTGTGCGCTCTCCCATTCCCAATCCCGTGGTAA
TTATTTTACTGCGTGATTTAGCCTAACTCTTTATACCCTCTTATCATCTCTTATTCTATTTTTA
AGGATCTGCTAACTACACGGCAGTTGAGAGATGGGAATGTGTAGTGAGCGTCATCGGTGGCTTG
GATCAGTGCTGGAGCACTTGTCCAGATTGGTCCTGGGGTTGCAGAAGGCGGGGGCCACAGGTAG
TGTTGTGAGGAAGGGTCTGTACCTCGGTGTCGGAGAGCAGGCGACGCGGTGGAGTCTAGGCAGA
TTGAGGCAAAGCAGATTGGGAAGTGGAGGTGCCAATGCGACATGGCAGCCAGGAAGAGGAAGCT
GGAGGAAGCAAAGGCATGTCTAGAACCCTTGCTGGTGAACATTGGATCTGGCGCCTCCCAAGCT
CACGGCTGCGGCGGTGGCGACGATAGCCACGACCTCCTCTATTCTCCAACGACGCACCGATGAG
CTCCGGTCATCGTCCTCCCCAACGAAACTTAACCTGGCAACTAGTAGGTTGGACTAGCCAACGA
GGCGGCGGACAAGCAACAAAGTGAGGTCGTTAGCTCAAAGCATGCTCCATGCCTGCCACCCACG
GTGGACAATGGGAACTAGGAAGCAGCTGATCAAATCCGGTGGCCTCAAGGATGGAAGCGGCTAG
ATTTGGCGCCATCTGTCTACTGGTGTTGCGACCGAATCTCGGTTGTTGTCATTCCTACCTCTCA
CGGTCATGGCGGATGTGGATCCGCCTTAGTGCTTCTTTGCTGGGAGGGGCGCCCACACCGACAT
TGAAGAAGATGCCCATCCTCTTCAGCCCCTCCATCATGCATCATCTGCATCAGCTCTAGGGAGC
CCTTCCATCCGCCGTGGTGCTCTCGTCTCATCGTCAGTCATCAACTGAATTTTTTTCTTTTTTT
TCGTTGTTCAAGACTAATGTGTAATTATTTGTGTGTGAGTTGTGTAATTGTTTTATATTCATAC
AATTTTATAAGTTTTCTACTGATATCATTTCCACTCACAAAAGCAGGACAAAACCAAAAGTAGG
GCAAAACGGGAAAAAACAAATATGTGGGAGTAGATTGACTGTTAAACATTATGGAAGAGACTAA
TATGAGCGGTAGTAATATTTTTACTCTATGAAGAGAACCGGAAAGCAGTCCATGAGCAAAGAAC
TCTAAGATGAATTGGAGATGAACCTAGCTGTATTATTGGTCAATGAGTAAATAAAAGTAAATCT
TTAGCAAAGATGAATTACTTATGAACCAGATGATCGATAAGTAAATTCTTTACACAGGATTAAT
TAGTTATGAAGCTGGACAATGAGATTAGTAGATAGTCAATGAGTAAATCCTTTACTTAGGACAA
AGATGAAAGGACAGGAGATGAGTGGATGGTTGAAAGGACAGGAGATGAGTGGATGAGTAAATCC
TTTACTCTGGAGTGTAATGTGAAATGTGGGGAGGAGGTGAGGAACAGAAAAAACTAGAAAAGCG
GATGTAATGAGTAAAGGACGGGAAGAAAGGAAAAACGAGGAAAAAGCATGATTGTGAATTAAGA
TTGATATTTCAAATTCATGTCCAGCAATATTTTTGAAATGCACCAAAGGGCACACTGGTCACTC
CACCCTAATTAACTCTCCTCTAGTGACAACAAATGATATATCATATGTACACCCTCCATTTCAT
ATTGTAAGATGTTTTGGTTTTGTCCGAAGTCAAATTTATTTAAGCTTGACCAAAGTTTATAAAG
AAACATAGCAATATTTCCAACACCAAACAAATATATTATAAAAATATATTTAGTTATGGTCAAA
TTTGAATTTGGTGTTGTAGATGTAGCTACATTTTTCTATAAATTTGGTCAAACTTGAATAAGTT
TAACTCAGGACAAAACCAAAATATCTTACATTACAGAACAGAGGGAATACTGAAATTTGTCTTG
CAGCAAATAGTCACAAAATAGCATTGTCCTATAGAGAAGACTAGTGGCTGGAACAAATTTGCCA
AATCTAAGGCATGATTCAAGGGTGGATGGGTATTACTTACCCCTTCAGGTGCTTTAAGATGCAT
ACAATTCTAGTTGGAGACTGCGAGCATAGAACCACTCAAACATATCAGATGATAATAAACAGAA
AAGCACAAGTTTGCAGTTGTATATATGTAATGATAATAAAGGTTTGTGTTAAAGCGGTAGCATA
ATTAATGCACTGGCTGAATCAACAAATTAACAGTCTGGGAACTTCCTGTTACTCATCATGCAAA
TTACTATAGCACCAAAGAATGAAGATAAAACTGACAAAAAAAACTAGTGTTGAGGACTTGAGGA
CTTGAGGTCTCTAGACAAACCAGCAGCCAATAAAAATGAAGTGCAACAAAACAGAAAAATTTAG
ATAAACAGAAAAGAATGTGTAAATAGAAAGGGAAATTTGAGCACAAACAAGGAAAGTATGTAGA
TTATGTCAAATTATCAACACATCCCAAGGGAAAAGTATTATATGCAAAATGTTAAATCCATGAA
CATCAAAAAGTTTTCTGCTAGTACATGGAAAAGCTTGTACCTCCAGGATGGGATAAAACCGGGA
CAACATCCATTTTGATTCTTCTCCTATCCGCTCCTTTCTGATACCATGCCTTTTCTAAAATTTG
TAGAGTTAAGTACAATTAAAATTACTATGGTTGAAAAGGTACATGACAACAAAACTAAAAGCCT
AATGAAATAACACAAGATACCTTACGTAGATCAAATTTCAGAGTAAAGCCACCTGCCGAAGACT
TTTTAGAATCATGCCCACAAAGGCAACGCATATTACTCACTGCAATCATGTCATCAGCAGATAA
TCCTGCGAG
Conservation Information
Conserved circRNAs osa_circ_023209
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021