Detail information of 2_circ_ag.13


General Information
CircRNA Name 2_circ_ag.13
ID in PlantcircBase ath_circ_015525
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12592989-12597812  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G29290_circ_g.1 AT2G29290_circ_g.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.12 AT2G29340_circ_g.1 AT2G29360_circ_g.1 AT2G29360_circ_g.2
Support reads 5
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTCCTAAAGGCTTCAGGCTATGGAAGCATCATCTTTGTTTCCTCTATTGCAGGGGTTATAT
CTTTTGACGCTGGATCCATTTATGGTCTAACAAAAGgagctctaaatcaattagctagaaactt
ggcatgtgaatgggcaaaagacggcataagagccaatgctgttgcacctaatgttgtcaagact
gctcagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCTCTAAATCAATTAGCTAGAAACTTGGCATGTGAATGGGCAAAAGACGGCATAAGAGCCAA
TGCTGTTGCACCTAATGTTGTCAAGACTGCTCAGTCTCAATCGGTAAAATAAAAATAACTTTTA
CATCTTTTTATTTTTGTGGATTTAACGACATCAATTTCTCTAATTATCTCTCAATTTTTGTGTT
AAAAGTTTCTTGAAGACGTCAGTAAAAAGGAGGGATTGTTGAGTAGAACTCCACTTGGCCGTGT
TGGAGAGCCGAATGAAGTTTCATCACTAGTGGTCTTCTTGTGTCTACCTGCAGCTTCTTATATC
ACAGGTCAAACCATTTGTGTTGATGGAGGTCTCACGGTTAACGGTTTCTCCTATCAACCACATG
CTTGAGAAATAGTCTTGTCGCTCTCAAAGTTCTATATCTAATAAAAGTTCTCATTCTATGAGTT
TATAAACGTAAACATCAATGAGTTTGCAATTCCATATTGGAGATACTAATCTCGCACATATACA
AGATTCGGTTACACCCGCTACGCCAACAACTCACACCAATGTGATCTCTCATTCTCTCTCATAA
ATGAAATGTTATACTATTTTTTGAGAATTGTAGCATTGATAGGATAGATTACAGTCTATATGTC
TCTGATTTTAAATGTTAATTGTAACACAAGATGATTATATTGTACATATTTTTGTTGTTGTTGT
TCCGTCTATTTTGCTGATTATACTTGTTTATTGTTGTTCTTCCGTGTCTGTCGTGTTTTATCTG
TTTGTCTTAAACTTTGTATTTTATATCTTGTGATTTTTGATACTACACGACAAAAATGACCTTG
TCGTGTTTTATCTTGTGAATTATTTTATTCTTTCGCTATTAGATTAATCCATTTTGTGAATAAT
TTGCGAGCAAGGCCCTCACACACATAATTATACCTTTTGAGTCTTGAATCAAAAGGCTGTCAAA
AAAAAAAAAAAAAAAAAAAAATCTTGAATCAAGTTGATAGATACATATGGGCTTGCGTGATCTT
GAGTCTTGAATTCATAATAGGCGAATTTGAATCTTGAACGACTAATCGATAACAAACAAACAAA
AAAATATTATATAATTGGTTAGAGTAGTTAACTCTATCACGCTTAATGAGCATTTTATATTTGT
CTTTGAATGACAATTCAAGTAAATACTTTAATTTCAAAATTGATGGATCGTTTTTTCATTGTAC
TTTTCTTCGAATAATATTAGAGATAATCTTCCACACTTAAAATAGATTAATCTCATTGTCTCTC
ATCCTACATAAGCTTCTTACTTTAATTTGTCTACATCCCTCTTGTCTCAATTAAGTATTATTAT
TAACGCTTCAAATTCTTACTACCTAAACACGTGAACAGTAGTCTTTCAGTAGTCTTTTAATTTG
CGAGTGAAGTTAATGAAAAAAATACAAAATGGTAAGTTTTGGTCAAGATTTTGACTATTAAAAT
TAATATTTGCTCTTGACCACTAAGTATATTTTTGTCATCTCTTTATTATGGCTAAAAATTGACA
CTTATCTAATACTCATTCATTGGATATATATATATAATGTGTAGCATTTCTGGTCAGTGAAAAT
TGACATACAAGGACTATGGATAAAAGGTGGAGTCTCCAAGGTTTGACTGCTCTTGTGACCGGTG
GAGCCAGCGGAATCGGGTTCGTCTAGATTCTCACTATATCAACTCTTTTACCCATTGTTCTGTT
TCTAAAATTCATTCTAAATTGTTAAAGTTTTAAGGAGTTTTATTATGTTTATCGAATGTTTAGT
CATGCTATAGTAGAAGAACTCGCCGGTTTTGGGGCCAAAATCCATGTGTGTGACATATCGAAAA
CTCTGCTCAATCAAAGTTTATCCGAATGGGAGAAGAAAGGGTTTCAAGTGAGTGGTTCAGTCTG
CGATGCATCCAATCGTCTCGAAAGAGAAACACTTATGCAAACTGTCACCACAATATTTGATGGC
AAGCTTAACATTCTTGTAAGTTAATCTTAATTTAAAGAAACTAAGCATATCTTTAAGCTATTTA
GAAATGACATGAATATATACTCTTTTCTGTTCAATATAGGTGAACAATGTTGGCACAATTCGCA
CAAAGCCAACAATAGAATATGAGGCAGAAGATTTTTCGTTCCTTATTTCAACAAACTTGGAATC
TGCTTATCATCTAAGCCAACTTTCACATCCACTCCTAAAGGCTTCAGGCAACGGAATTATTACT
TTTATTTCCTCTGCTGCAGGGATCGTATCATTTGATGCTGCATCCATTTATGGTCTAACGAAAG
GTAACCATAGTGAAAAGTTTAATACTAGAGGAAGTTCATTGCAAGAATGACCAAATAGTATTGT
GGATTTATATATGTTTCATTATGTATATTATATATTTGATTAGGATAATTTTCAATCCCATTTA
ATAATTTCAAATGATATTTGAGAAGAATTGTTTTTTTTTTTTTTTTGTGCGTGAAATCTTATTT
TAGTGTGCTATGCTAACATTTTTGGTTTCAGAAATATATAATTCAGAAGGTCAAATATAGGGCA
TTCATATTCAATAACATACAAAAACAAAACTAATTTATAACTATGCATGTTATTTATGGATAAT
AAATCTTTTTATTTTTATTTAGATGGTTCATAAATATCGCATTATGTCTCCGAAAGCTGATTCT
AACGGCTAATTGATTGCCCTAGTATCATTCGTTTCTATTTCTAAATTGGTCTATCTTTCTTTGG
GAATCCTAATAGATGTCTCTCATAGTCATAGTATTATTTTTTCTTGTTTGTGTATATGTTCAGG
AGCTTTGAATCAGCTAGCACGAAATTTGGCGTGTGAATGGGCAAAAGACGGCATTCGAGCCAAC
GCGGTTGCGCCTAATTTTATCACCACTGCTCTGGCTAAACCTGTAACCAATACACCCTCTCTTT
TTTTTCTTTTTTTTCCTTTTAAAATTAACATCATCACCCACTCTTATTCTTGTTTTTTACAATC
TTGTAAACATTCAGTTTCTCGAAGACGCTGGTTTTAACGAGATTTTGTCGAGTAGAACTCCACT
TGGTCGCGCTGGAGAACCAAGAGAGGTTGCCTCACTTGTGGCTTTTCTGTGTCTACCTGCTGCT
TCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCATATC
AGCCATAGGCTTGAGCCATGTCTTGTCTTGTCTTGTGTGTTGTGGAGTATGGTCATATGGTCAG
TATCTCCATAATCTAAATCCATAGATATGTGAGTTGTGGAGTAGACACAATTTTTCAATAATGG
AATATCTATTTACCAGTTCCGTATTATGCATGCATTCTCCATGACAACGCTTCTCATAACGAAT
ATAATTACGTGGATCATAATACTATGAGGATTGATATCATTGAGATGGAGTAGACACAGTTATT
TTCTTCTTCCCTTGCCATTAGCAATTTCAATTGTATCTATGCTTGAAATACTTAAATGGCATTT
ACTTCTTAACTAAAAAGCGAAAGGAGGGAAAGAACAAGTCATTACAAGATACTATAATAATTAG
AAATTAAAAGAGTATAATTACATCTTCCCAAATGTGTCAAATATTCAGCAAAAACTCTGTCAAT
AGAAATGAACAAACGGTATTTTAAAGTAATACAATGGGTAAACTTTAGATATTTTGTAAAAACC
TAATTAGAAAAAAAATTTGGAAATCTTAGTTGAAGATAACTACCCAAATTATGAAAAAAAAAAC
ATTTGCCTTCTTGTTACCTAACTAACACGTTGAATGTTTTACAAAAATTTTGTTCACCAGTCTA
ACTGACTTGTCGTTTCAGTTGTCATCTTTTGAATGAAATTAATGGAAAAGAAAGAAACAAAAAT
GAGTAAGTTTAGATCAAGATTTTGACTATTAAAAGTCATATTTGCTCTTGACCACTGACTTGTA
TATTTTGTCATGTTATTTATTATGGCTAATATATCCACCACACATACAAACATACTCATTAATT
GACCCTTATCTTTTATTTTTATGGTAAGAAAATTGACACTTATCTAATACTCACTAGGTGTGTA
TATATAATGTAGCATTTCTGGTCATTGAAAGTAACTTACAAGCAAAATGGACAAAAGATGGAGT
CTCAAAGGTATGACTGCTCTTGTGACCGGTGGAGCCAGTGGAATCGGGTTCGTCTTTCTTCTCT
GTTCTCTCTATGTCATCTATTTTACCCATTGGTCTGAATCTGTTTGAACATTAAGATTTGAAGT
AGTTTATGTTTCTGGAATGTTTTAGTTATGCCATAGTAGAAGAGTTGGCTGGTTTTGGAGCTAG
AATCCATGTATGTGACATCTCTGAAGCTAAGCTCAATCAAAGTTTAAGCGAATGGGAAAAGAAA
GGTTTTCAAGTAAGTGGCTCAGTTTGTGATGTAGCCTCTCGTCCCGAGAGAGAAGAACTGATGC
AAACCGTCTCCTCGCAGTTCGATGGCAAACTCAACATTCTTGTAAGTAAATTAATTTAAAGATA
CTATCAAGTTAATCATATTCGTGGGGGAAATCTTTTAAAGACCAATTTTTTCAACATGCATAGG
TAAGCAATGTGGGCGTAATCCGCTCAAAGCCAACAACAGAATATACCGAAGACGATTTCGCTTT
TCATATATCATCAAACGTGGAAGCTGCTTACCATTTTAGCCAGCTTTCACATCCTCTCCTAAAG
GCTTCAGGCTATGGAAGCATCATCTTTGTTTCCTCTATTGCAGGGGTTATATCTTTTGACGCTG
GATCCATTTATGGTCTAACAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.290387309
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR857
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017