Detail information of 2_circ_ag.12


General Information
CircRNA Name 2_circ_ag.12
ID in PlantcircBase ath_circ_015524
Alias At_ciR345
Organism Arabidpsis thaliana
Position chr2: 12592659-12597509  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G29290_circ_g.1 AT2G29290_circ_g.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.13 AT2G29340_circ_g.1 AT2G29360_circ_g.1 AT2G29360_circ_g.2
Support reads 13
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAGTAAGTGGCTCAGTTTGTGATGTAGCCTCTCGTCCCGAGAGAGAAGAACTGATGCAAACC
GTCTCCTCGCAGTTCGATGGCAAACTCAACATTCTTgtaaataacgtgggggtacttcgcggaa
agccaacaacagaatatgtggcagacgatttcacttttcatatatcaactaacttggaagctgc
ttaccatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAATAACGTGGGGGTACTTCGCGGAAAGCCAACAACAGAATATGTGGCAGACGATTTCACTT
TTCATATATCAACTAACTTGGAAGCTGCTTACCATTTTTGTCAACTTTCACATCCTCTCTTAAA
GGCTTCAGGCTATGGAAGCATTGTATTCCTTTCCTCTGTTGCTGGGGTTGTATCACTAATTGAC
TGTGGATCCATTTATGGTCTAACAAAAGGTAAATTACTCCAAATCTGACTAATCAACAAAGAGT
TTTTTACCAAAAAAAACAAAACAAAGAGTTTTCTGCTTCCTTATTTTGTAGTGTTTTGTTGACT
TCTTTTATAGGAGCTCTAAATCAATTAGCTAGAAACTTGGCATGTGAATGGGCAAAAGACGGCA
TAAGAGCCAATGCTGTTGCACCTAATGTTGTCAAGACTGCTCAGTCTCAATCGGTAAAATAAAA
ATAACTTTTACATCTTTTTATTTTTGTGGATTTAACGACATCAATTTCTCTAATTATCTCTCAA
TTTTTGTGTTAAAAGTTTCTTGAAGACGTCAGTAAAAAGGAGGGATTGTTGAGTAGAACTCCAC
TTGGCCGTGTTGGAGAGCCGAATGAAGTTTCATCACTAGTGGTCTTCTTGTGTCTACCTGCAGC
TTCTTATATCACAGGTCAAACCATTTGTGTTGATGGAGGTCTCACGGTTAACGGTTTCTCCTAT
CAACCACATGCTTGAGAAATAGTCTTGTCGCTCTCAAAGTTCTATATCTAATAAAAGTTCTCAT
TCTATGAGTTTATAAACGTAAACATCAATGAGTTTGCAATTCCATATTGGAGATACTAATCTCG
CACATATACAAGATTCGGTTACACCCGCTACGCCAACAACTCACACCAATGTGATCTCTCATTC
TCTCTCATAAATGAAATGTTATACTATTTTTTGAGAATTGTAGCATTGATAGGATAGATTACAG
TCTATATGTCTCTGATTTTAAATGTTAATTGTAACACAAGATGATTATATTGTACATATTTTTG
TTGTTGTTGTTCCGTCTATTTTGCTGATTATACTTGTTTATTGTTGTTCTTCCGTGTCTGTCGT
GTTTTATCTGTTTGTCTTAAACTTTGTATTTTATATCTTGTGATTTTTGATACTACACGACAAA
AATGACCTTGTCGTGTTTTATCTTGTGAATTATTTTATTCTTTCGCTATTAGATTAATCCATTT
TGTGAATAATTTGCGAGCAAGGCCCTCACACACATAATTATACCTTTTGAGTCTTGAATCAAAA
GGCTGTCAAAAAAAAAAAAAAAAAAAAAAAATCTTGAATCAAGTTGATAGATACATATGGGCTT
GCGTGATCTTGAGTCTTGAATTCATAATAGGCGAATTTGAATCTTGAACGACTAATCGATAACA
AACAAACAAAAAAATATTATATAATTGGTTAGAGTAGTTAACTCTATCACGCTTAATGAGCATT
TTATATTTGTCTTTGAATGACAATTCAAGTAAATACTTTAATTTCAAAATTGATGGATCGTTTT
TTCATTGTACTTTTCTTCGAATAATATTAGAGATAATCTTCCACACTTAAAATAGATTAATCTC
ATTGTCTCTCATCCTACATAAGCTTCTTACTTTAATTTGTCTACATCCCTCTTGTCTCAATTAA
GTATTATTATTAACGCTTCAAATTCTTACTACCTAAACACGTGAACAGTAGTCTTTCAGTAGTC
TTTTAATTTGCGAGTGAAGTTAATGAAAAAAATACAAAATGGTAAGTTTTGGTCAAGATTTTGA
CTATTAAAATTAATATTTGCTCTTGACCACTAAGTATATTTTTGTCATCTCTTTATTATGGCTA
AAAATTGACACTTATCTAATACTCATTCATTGGATATATATATATAATGTGTAGCATTTCTGGT
CAGTGAAAATTGACATACAAGGACTATGGATAAAAGGTGGAGTCTCCAAGGTTTGACTGCTCTT
GTGACCGGTGGAGCCAGCGGAATCGGGTTCGTCTAGATTCTCACTATATCAACTCTTTTACCCA
TTGTTCTGTTTCTAAAATTCATTCTAAATTGTTAAAGTTTTAAGGAGTTTTATTATGTTTATCG
AATGTTTAGTCATGCTATAGTAGAAGAACTCGCCGGTTTTGGGGCCAAAATCCATGTGTGTGAC
ATATCGAAAACTCTGCTCAATCAAAGTTTATCCGAATGGGAGAAGAAAGGGTTTCAAGTGAGTG
GTTCAGTCTGCGATGCATCCAATCGTCTCGAAAGAGAAACACTTATGCAAACTGTCACCACAAT
ATTTGATGGCAAGCTTAACATTCTTGTAAGTTAATCTTAATTTAAAGAAACTAAGCATATCTTT
AAGCTATTTAGAAATGACATGAATATATACTCTTTTCTGTTCAATATAGGTGAACAATGTTGGC
ACAATTCGCACAAAGCCAACAATAGAATATGAGGCAGAAGATTTTTCGTTCCTTATTTCAACAA
ACTTGGAATCTGCTTATCATCTAAGCCAACTTTCACATCCACTCCTAAAGGCTTCAGGCAACGG
AATTATTACTTTTATTTCCTCTGCTGCAGGGATCGTATCATTTGATGCTGCATCCATTTATGGT
CTAACGAAAGGTAACCATAGTGAAAAGTTTAATACTAGAGGAAGTTCATTGCAAGAATGACCAA
ATAGTATTGTGGATTTATATATGTTTCATTATGTATATTATATATTTGATTAGGATAATTTTCA
ATCCCATTTAATAATTTCAAATGATATTTGAGAAGAATTGTTTTTTTTTTTTTTTTGTGCGTGA
AATCTTATTTTAGTGTGCTATGCTAACATTTTTGGTTTCAGAAATATATAATTCAGAAGGTCAA
ATATAGGGCATTCATATTCAATAACATACAAAAACAAAACTAATTTATAACTATGCATGTTATT
TATGGATAATAAATCTTTTTATTTTTATTTAGATGGTTCATAAATATCGCATTATGTCTCCGAA
AGCTGATTCTAACGGCTAATTGATTGCCCTAGTATCATTCGTTTCTATTTCTAAATTGGTCTAT
CTTTCTTTGGGAATCCTAATAGATGTCTCTCATAGTCATAGTATTATTTTTTCTTGTTTGTGTA
TATGTTCAGGAGCTTTGAATCAGCTAGCACGAAATTTGGCGTGTGAATGGGCAAAAGACGGCAT
TCGAGCCAACGCGGTTGCGCCTAATTTTATCACCACTGCTCTGGCTAAACCTGTAACCAATACA
CCCTCTCTTTTTTTTCTTTTTTTTCCTTTTAAAATTAACATCATCACCCACTCTTATTCTTGTT
TTTTACAATCTTGTAAACATTCAGTTTCTCGAAGACGCTGGTTTTAACGAGATTTTGTCGAGTA
GAACTCCACTTGGTCGCGCTGGAGAACCAAGAGAGGTTGCCTCACTTGTGGCTTTTCTGTGTCT
ACCTGCTGCTTCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGC
TTCTCATATCAGCCATAGGCTTGAGCCATGTCTTGTCTTGTCTTGTGTGTTGTGGAGTATGGTC
ATATGGTCAGTATCTCCATAATCTAAATCCATAGATATGTGAGTTGTGGAGTAGACACAATTTT
TCAATAATGGAATATCTATTTACCAGTTCCGTATTATGCATGCATTCTCCATGACAACGCTTCT
CATAACGAATATAATTACGTGGATCATAATACTATGAGGATTGATATCATTGAGATGGAGTAGA
CACAGTTATTTTCTTCTTCCCTTGCCATTAGCAATTTCAATTGTATCTATGCTTGAAATACTTA
AATGGCATTTACTTCTTAACTAAAAAGCGAAAGGAGGGAAAGAACAAGTCATTACAAGATACTA
TAATAATTAGAAATTAAAAGAGTATAATTACATCTTCCCAAATGTGTCAAATATTCAGCAAAAA
CTCTGTCAATAGAAATGAACAAACGGTATTTTAAAGTAATACAATGGGTAAACTTTAGATATTT
TGTAAAAACCTAATTAGAAAAAAAATTTGGAAATCTTAGTTGAAGATAACTACCCAAATTATGA
AAAAAAAAACATTTGCCTTCTTGTTACCTAACTAACACGTTGAATGTTTTACAAAAATTTTGTT
CACCAGTCTAACTGACTTGTCGTTTCAGTTGTCATCTTTTGAATGAAATTAATGGAAAAGAAAG
AAACAAAAATGAGTAAGTTTAGATCAAGATTTTGACTATTAAAAGTCATATTTGCTCTTGACCA
CTGACTTGTATATTTTGTCATGTTATTTATTATGGCTAATATATCCACCACACATACAAACATA
CTCATTAATTGACCCTTATCTTTTATTTTTATGGTAAGAAAATTGACACTTATCTAATACTCAC
TAGGTGTGTATATATAATGTAGCATTTCTGGTCATTGAAAGTAACTTACAAGCAAAATGGACAA
AAGATGGAGTCTCAAAGGTATGACTGCTCTTGTGACCGGTGGAGCCAGTGGAATCGGGTTCGTC
TTTCTTCTCTGTTCTCTCTATGTCATCTATTTTACCCATTGGTCTGAATCTGTTTGAACATTAA
GATTTGAAGTAGTTTATGTTTCTGGAATGTTTTAGTTATGCCATAGTAGAAGAGTTGGCTGGTT
TTGGAGCTAGAATCCATGTATGTGACATCTCTGAAGCTAAGCTCAATCAAAGTTTAAGCGAATG
GGAAAAGAAAGGTTTTCAAGTAAGTGGCTCAGTTTGTGATGTAGCCTCTCGTCCCGAGAGAGAA
GAACTGATGCAAACCGTCTCCTCGCAGTTCGATGGCAAACTCAACATTCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.602032007
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR857
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015