Detail information of BGIOSGA014558_circ_g.2


General Information
CircRNA Name BGIOSGA014558_circ_g.2
ID in PlantcircBase osi_circ_014646
Alias Chr04:28629039_28631149(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26850275-26852383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014558
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014558_circ_g.1 BGIOSGA014558_circ_g.3 BGIOSGA014558_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014558-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGACTATACCTGCCCCAACTGCTTTGCACTTTCCTTTGATTTAGGATCATCCAAGAATAGG
GTAACTTCTTTCATCGCACACATTTCACCACTATCAcctgtgttttgaagaaaattttgcacct
cttctctggtaaattgtctgaccctccaatcccaatgaggaaatatttcttgtatgcgcagcca
tctgaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGTTTTGAAGAAAATTTTGCACCTCTTCTCTGGTAAATTGTCTGACCCTCCAATCCCAAT
GAGGAAATATTTCTTGTATGCGCAGCCATCTGAAAACTCAAATAATACCAAGCAAAGTGAACAG
GCCATGAATTATCCATGTAACCATGTTATGTCAGTTATGGCAGTATTCAAGTGGTACCTTGGCG
CTCGGTCTACAAGATATAACAGCCAAATGTTCCAATGGTTCAGAAAGAACAGATTTCTCTAGTG
ATACTGCTTTTTGAACAAATGGGTGCTGCAAAAGCTCCATTGCAGTGGGACGTTGAGAAGGATC
ACGTTGCAGGCACTTTCTGATGAAGTCCTTGCCTGGCTCTGAAAGGTGATCTGGTATTGGTGGA
AGTTCCTTGCTATTTCCGATCTTGAACATTGCAGCAATCTGCAGGAATGAAAGAGGGGAATGTT
CCTGCCAAAGTTGCTTCGGTGAAACTTCCAAGTCTCATTACGAGTCAAAAGAAGGAAGTCTTTA
CATTTCAAGCACCTTTCATAAAATTGCATGCAAGTAAATGATCTTTCAACATTCTACATCAGAC
AGTGATAAATTCTTAAAGAATTCATGAAAAGAACATTTCCATATCCCATTCACTCATGGCGAAA
ATCACCATAATTAGGTTATCTATATTATAGAACAAATAAACTGTGCCTCAGAAGTATAATACTA
ACCCCTTCATACTGGCTCCATGGCGGTTTCGATGTAGCCATCTCCAGGACAGTGCATCCCAAAC
TCCATATGTCAACAGCTAGGTTGCACCCATTTGAGTTTTTTATAACCTGCGTATGTGTTGCATA
GTATGTGATGTACAGAAATGGCAATAAGATATGCATGAAACAAAAAATTAACAAGTAAAGATTT
TCAGTGATACCTCTGGAGCCATCCAATATGGACTACCCTTAAAGGAGAAAGGACACTGCTGCCC
ATTGATCTGCATAAAGACACATTTAATACGTATTCATGAGTAAAATACTTCCACATTATACAAA
AGGCATTTTGTAACTTATCAGGAGTGAGGGGGCTAGCAAGGTTTCAAGCACCCTTAACAGCAGT
ACTCAATCAATGCATTAACCAGTGACAGGAGCTACAAGATCAAGTTGATATAGATACTGCTATA
TATTTTTGAAGAGCTCGATATAATTCAAACAGTTGTGACTATGATATGAGGCATAGATGCAGAA
ATGGAATGACACGGAAAATAAAGTTCAATTGACAAAAGTCATTTTCAAAAAATTAAAGTGGGCA
GAAAAACTTACATGTTTTGCCATTCCAAAATCTGCAAGCTTAACACGACCACTAGGATCTACTA
GTATATTTGCACCTTTAATATCCCTGCAAAATTGTGATGAACAGGACTTATAATTACACCATAA
TTCCACCGATACAAACAAACCAAAGAAAAGAGAGAAAACCAAAGAAATTGCTACCTATGGACTG
TATTCTTCGCATGCAAATAAGCCAACCCTGAAAGTATCTGCTGTGTGTAGCTGCGTATTGCTTG
TTCACCAAGCTGTCCATACTCTTGCAGAAGTTTATGGATAGATCCACCAGATACATACTCCAAG
TATATATAAAGCTTATCATCAACCTGTATTGGGGCACAAATAATAAGTGAAGCCAAAAAAGAAA
ATCAAAAGTGGTACATAAATAACTCATTAATGAAATCCTAGATGCTATCATGCAACTTCTTGTT
ACCCTTGGTAAAGGGAGGAAAAAAATAATTATATAATGACCAAACAGGAAACAATAATTGAGTT
AATGGTTCCAAGCAAAGGAAAACCTAGCCTATGTAAACAGACTGAAGGCAGCATTTATACCGTT
TCTGATCCATAGTATTGTACGATATTTGGATGCTGTAGGCGGCTCAATAGTGATATTTCCTGAG
AAACAAAAAAAGAAAAACAGGGAATCATATATTGAACAGGAAAAGACATAATCTGAACTTCTTT
TGCAACTGTAGGTTAAAGCACAATCAACAGACTATACCTGCCCCAACTGCTTTGCACTTTCCTT
TGATTTAGGATCATCCAAGAATAGGGTAACTTCTTTCATCGCACACATTTCACCACTATCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021