Detail information of POPTR_0008s03720_circ_ag.3


General Information
CircRNA Name POPTR_0008s03720_circ_ag.3
ID in PlantcircBase pop_circ_002270
Alias Chr08:2084737|2089494
Organism Populus trichocarpa
Position chr8: 2012877-2017641  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0008s03720_circ_ag.1 POPTR_0008s03720_circ_ag.2
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   CC-CT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAATCCTTCATCCTCTTATCAACCCACTTCCTCAATTCACCCCCACCAACAGCCATCACCTCC
CTTGCCCTCTCAATAACACTAATTCTCTTATAACCTccaccccccttatcaaacacatatcgca
acgcctcctccccagacaccaactccaaaatcaccaccccgaatgcatacacatcacatttctg
agtcacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACCCCCCTTATCAAACACATATCGCAACGCCTCCTCCCCAGACACCAACTCCAAAATCACCA
CCCCGAATGCATACACATCACATTTCTGAGTCACAAATCCACTTGCCTGAAACTCCGGCGCCAT
ATATCCTGTCGTTCCTTCAAATTTCATTTCCCTACTATCTGACCTACCAAAATTTTTCGACAAA
GAACTTTCATTCCCCACCATCTCTCCACACAATTCAGCAGTCCCAAAATGACAAATCTTGGCAT
TCAAAGAATCTTCAGTAACTAAAATGCTTGAACTTTTTATACGACCATGCACAAATTCTGAATT
CAAACCTGAACAGTGGAGAATATAATCAAGACCATTAGCTATATCAGTAGCAATCTGCATACGA
GATAACCACGATGATAAAACTGTGTAACTGGGGTTCTGTGGATTCCTAAGACAAGTAGCTAAAT
TTGCACCATGAACATACTCATAAACAAGATAGATAGAGTTCCCTGGAGAGGAAACACCAAGAAG
CTTGATCACGCTACTGTGATGACTCCTGCAAATAGTCAGTAACTTCTTTCGAAGCTCAGGTAAT
CCAATCTGACGGCGAAACTTGCGTTGAAAAATAATCACTTCTTTTCCACGAATTGAGCATCTCC
AAGAGGTTGATGAAGAGGAAGAAGAAAAGGGTTTCTTTAAAAAGTTGTTGGTAGTTTTACAGAT
TTCAGAGAAGTCATAAATGTGAGGGTTTTCTGGTAATGAGTCTTTGAGGCTGGAAAGAGATGTT
TTGCTTGAGAAAGACAGGGACTTTGATGCTTCTGAACAGGTTGGAGAGTCATTTGTTGATGGGT
AGTTGTTAGATGATGGGTTGATCAAAGAGGAAGCAGGTGATGATGATGTTGCTGATGGTGATGG
TGATGGTGATGGTGATGGTGACGGTGACGATTTTAAGGACTTCGATGTCTTGGATTTTGGGTAA
AGAGAGTTGATTATGTTCATGTTCTTTTTTTATTTGCGCAAGAGCAAAGAAATCTTTGAAACAG
AAATTTGATTGTTTACTTTGGGGGCATGAGAAAGGAGAAACCAAGATATTTCGATTTGTAGAAA
TCTAGGAATTTTAGGCTGTTTGTTGTTTTTGCCTTTTTGGAGGTTTCCAGTTAGGTCCTTGTCC
AGTTATTTTTTTTTTTTTCAATGGAAGAAATAAGAAGAATAAAAGTCATGTGTGGGTCTTCTAT
TTTACGTATTTAATTAAGTTAAATTAATCTGAGATCCTTCATCCAATTATATAATTACATATGG
AATCCATGCAATCTAGTAAAATAAGTAGACAAAGTTAAAAATATAGTTGTGGATTGTTTTTTAA
AAAATCCAAGACTAGAACTTAATTTAGCCTATTGATTTGTTAAAACCAACTCAATTGGTTTTTT
TAAAACATGAATAACTCGATTAAACTTGATTCAAACCTAGTTGATTAAACATAATAAAAAACAT
AAACAATAAAAAATTATTTTAATAAAAACAATTAATCAAGATTCATCTAATAATATATAACCTC
ATCCGAAAAAGTTGATGACTAATGCTTTTTTTTTTTTCTGATTAATTCTCAAATCTATAACTGT
TATGAGACCCGATCGATAATCAATCTGACTAAAGTTTGAGTTTATAGATAAAATAGATTAACTT
GAATAAATTAAAAATCTTTAAAAAAAAACTCTAAAATGATATCATTTTTAAATTTTTTTTATTG
ACCACTCTTAAACCAAACCACCGAGTTAACCTACTAACCAGGATTGAACTCTTATAGTTAGGCT
GAAATCGAGTCTTATAAATATGGTCACGAGGGCTAAGTGACTTTTTAATTAGCAGTGAAAGAGT
AAATTTTATATAATTTAAAATAAACGATTTGACTTAATAAATATAAATAAAATAGAGGGACCAC
ACTTGATTTTTAGTCATGTAAATCATCTTGGGTCTTCGGCCGAAGTTAGAAAAGACGCGGTTCG
TCTTTGGTGCACGCTTGTATCCTTTATTTTTTATTTTAATGTTTTAAAAAAATTATTTTAAATT
AATTTTTTTGATATTTTTTTATTATTTTAATATATTAATATTAAAAATAATTTTTAAAAAATAA
AAAAAATATTATTTTAATATATTTTTAAGTAGAAATCACTTTAAAAATTAACCGCAATCATATT
CTTAATCACGTAATTAGATTCAAATTTTTCTTGGATTTTCTTTAAAATTTTGTGTAATGTTTTA
TTATCTATCATAATTCATTCCTGATTTTAAATTAAATTAAAATAAAATAAATACTGATACTGCA
TTTTTTAAAAATTCCAATTACTACTTTGCTCACATTATACTAAGTAATTTATTCCCCATTTTTG
TAATCAAATAATTACGGCCTAAACCACTGGGCTAGATGATTCGTGATGAAAATAAGGACGGTCT
GGATTTTTTTTTTAAATACTGTTTATACATTCTGGTTAATTAGGTATTAAAATTTTAAATTTTA
AAAATTGGCCACACGTCACTGGTCCTCTAACTACAGCCGCCAACCGCGAACAAATCAAATAAAC
AATTCTGTTCACATTAGACTAACCCCCCTCTATACAGTGTTTAGGATTTGACAATCAGACCCCT
TTTCAGTGGAGCTGACTTCATTCAACCTCAAAACTTACAGTTTTTTTTTTTTTATTATTATTAA
TTTATGGCGAGTAATATTTTCAAGTCAGCCGAAACTAAATTTCAACTCAGAAATCCCTTAAATA
TTGATCCTAATTTTCAAACATAAAAAATCTATATAAAAAAAGGAGGAACCTCTCTGGCCACGAT
AATTATCCTTTAAATTAAATTTCATCTTGTATATACAAGCTATTTAACTTTTCCCATAATATAA
TGCAGGAGATGTCCCCCGAAACCTCTATTTTTAAAAAAAATATATATAGGATTTTTTTAATATT
AACAAAATAATACAATTTACAAAATAATTGATGAAATACTATATTTTAATTTATATGTCACTAT
TGAAAAATATTATGAAATGAGAAGAGAGGAGAGGAGAAAAAACAAATAAAAAAAGTCATCAAAG
CATATTGAAACTTTGATTATGATAATATTTATATTATCAAAAAAAAATTAATGAGATTAAACTA
ACAATATTAAATTTTTTTAACAAGAATAACTCACTTACTTTTAATAATAAGCATAACTCATTTT
TTCTATTATTGATGATTTTTTTTTAATATTGTTGTATTTTTTTTTTAAATTAACATAGATGTTC
TAATCAACTTGCATGAATCTCGATTAATTTTATGAGTTTTAAAATTAATAATTATTGATTTTTA
TACAGCAAACTCGCTAGGTGGTAAAGATTTCTCTACTATATCTGTAATGTTTTAATTGTAGCTT
TGAAATTTGAAGCCTGTCTAAAGCTGGAAACAAACAGCAAAATCCAATCTTGGTTTTCTAACCT
TTTCTTTTGTGGGGGTAATACATTTGATCCCAGTGACGCGCACACCTTGGAAGTTAGAACTTCT
GTGTGTTCTCCAATTTTCTTGTTTCAGACAACTAGTCAAGTGTAGAAATATAGAACCAGTCACA
GCCTTTGGTTTTTTGTTTCGAGCAAAGAGCAGGGCAACATCACTTCACATAGAAGGCAGGGTAA
AATTATGCCAAATCAACATCCCCCATACATCACTTGGAACTGGAAAAAAAAATTACAAACTCTT
ACAATCAATAGATGTGTGGATTAATCCACAGTAGACTCACTCACAAGTCTCATACATCATAGGA
TTAAGCATAACGTTCCTTGTGAAGGCTGCGTTTTTTAGCTTCTTTGTACAGGGAGAAGCATTTA
GTTTCTCTCAACATGAATATCATGATGCTGCTCTGCTCAGCTCAGATCAAATGAATGGTAATTT
CATGGAAGTCAGCCAAAGCCCAACTGTGCACCCAAGAAAAGTCCAACCGATACTGATACTCAAT
GCTGCCCTTATTACTGCTGCTTCGATCTTTTCATAGCAAGATTATCGTGCAAATAGGAAAATAA
ATATTTAGCAACATCTCGTTTCAAAGCAAACGTTTTACGCCTTCGGATTACCAGAATCCATAAT
GCAACAATCTTCTAAAGCCTAAACAGAAAACAAAGTTGATTTTCCAGTAGCATTGAAGTTAATA
TGTATCGAAAGCAACAAACAAACATGTTTTTCGAGCTCAAGATGACATTTTTAGCCTGCTGCAT
TCATTGAAGGAAGAATTTAGTAAAGATATTGAAATGACAGAAAAAATAAAAAAATAAAATAAAG
CATGTTAATGCAGAAATCTCGCTTGTTTATATTATCATCATGTATACAAAAATCAATAATTTTT
ATTAGTTTCTCCAGAAAGAATGACTATAAAATCAGGAGTCCAGATAAAAAAAACTCAAATCCTA
TATTCACAAGCACAATCGACAACAAAAATCATCAATTGATGTATCATTTCTCATTAACCACTCT
TAACGAGGCGCCAATGAGACTGAGAAATCAGTAGGCAAACCAATCTTTTCAGCCCAATTCTTTG
ACTCCAAATACAATCTAGACACTCTACCATCAACCAGCCCCATATCCGGCCGCTTCTCTGGATC
ATCATCCACACATTCCAATCCCAACAACAACATCTTCTCTGCAACTTCAACTGGATACGAATCC
TTCATCCTCTTATCAACCCACTTCCTCAATTCACCCCCACCAACAGCCATCACCTCCCTTGCCC
TCTCAATAACACTAATTCTCTTATAACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.09542852
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020