Detail information of Os11g0473000_circ_g.2


General Information
CircRNA Name Os11g0473000_circ_g.2
ID in PlantcircBase osa_circ_009332
Alias NA
Organism Oryza sativa
Position chr11: 16307672-16308505  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0473000
Parent gene annotation Similar to ER lumen protein retaining receptor (HDEL receptor) (
PGP169-12). (Os11t0473000-01);Similar to ER lumen protein retain
ing receptor (HDEL receptor) (PGP169-12). (Os11t0473000-02)
Parent gene strand +
Alternative splicing Os11g0473000_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0473000-02:2
Os11t0473000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATAT
TGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgcatatctctaaagacccaggagctata
tgcacttgtgtttgctgctcgttacttggacctgttcattcattttatatctctgtataacact
gtcatgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 382
Transcript exons: 16307672-16307937,16308390-16308505
GCATATCTCTAAAGACCCAGGAGCTATATGCACTTGTGTTTGCTGCTCGTTACTTGGACCTGTT
CATTCATTTTATATCTCTGTATAACACTGTCATGAAGTTGGTCTTTCTGGCAAGTTCTTTCTCA
ATAGTTTGGTACATGAGGCGGCATAAGATTGTCCGAAGAACCTATGACAAGGATCATGACACCT
TTCGTCATCACTTCTTAGTGTTGCCATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTAC
TTTTAGAGAGGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTT
GTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG

Genomic sequence GCATATCTCTAAAGACCCAGGAGCTATATGCACTTGTGTTTGCTGCTCGTTACTTGGACCTGTT
CATTCATTTTATATCTCTGTATAACACTGTCATGAAGTTGGTCTTTCTGGCAAGTTCTTTCTCA
ATAGTTTGGTACATGAGGCGGCATAAGATTGTCCGAAGAACCTATGACAAGGATCATGACACCT
TTCGTCATCACTTCTTAGTGTTGCCATGTTTGGCTCTGGCCCTCCTTATTAATGAGAGGTTTAC
TTTTAGAGAGGTCAGTTTGATTTCTTCTGCATTACCGCATAGTGGTGTTTACAACTGTGATGCT
GTTGATATGTAAAGCAATTCAATGGACCATTTACCTTTGTAGGCTCCCATCGGATGGCCTAAAT
AGCCAAAGAAAAAGCCAAATTTTAAATTTTCAAACTTGATTTTGAGATATTTTCAACGTAGTTT
CTTTTTCAGCATTAGCTTTTAAGTCACCAAGAATACATATATAAAAGTTTTACCAACAAATTCA
TTTTTATTCCTTAATAAGCCGTTTTGGCTTATTAGGGGAAAAGCCAAACAATGGGGCCGGTAGA
TTATGTACTACCATTTTTGAATTTTGGACATCAAATCCATCATTTATGGATGTGATGGAAGTCT
GTTTGCCTCTTTTATTGTTGAAACTTAGTACATTATAGACTCTGCAATTTTGACCATTCACACC
ATTATTTGGGGCAGGTTATGTGGGCATTCTCCATATATTTAGAAGCTGTAGCAATTCTACCTCA
ACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTA
GG
Conservation Information
Conserved circRNAs osi_circ_009005
PMCS 0.286729826
Functional Information
Coding potential Y
Potential coding position 16307768-16307756(+)
Potential amino acid sequence MKLVFLASSFSIVWYMRRHKIVRRTYDKDHDTFRHHFLVLPCLALALLINERFTFREVMWAFSI
YLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGHISKDPGAICTCVCCSLLGPVHSFYISV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017