Detail information of Os03g0238700_circ_g.1


General Information
CircRNA Name Os03g0238700_circ_g.1
ID in PlantcircBase osa_circ_018776
Alias Os_ciR4779
Organism Oryza sativa
Position chr3: 7324303-7327873  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0238700
Parent gene annotation Similar to Acid phosphatase type 5. (Os03t0238700-01)
Parent gene strand -
Alternative splicing Os03g0238700_circ_g.2 Os03g0238700_circ_g.3
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0238700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATACCCAAAGATAGATTGACCCTCACCGTGAAGGCTCTTTGCCTAAGATAAGGTTTGTTGTCA
TCACTGTGCCACCCAATAGAAGCTCCCTTGCACCAAcattaggagcgtcagtgaccatggtgac
accaaggagcttctgcaacttctacttccagttctgaaggttatacagaagttgcctcgatatt
aagttctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTAGGAGCGTCAGTGACCATGGTGACACCAAGGAGCTTCTGCAACTTCTACTTCCAGTTCTG
AAGGTTATACAGAAGTTGCCTCGATATTAAGTTCTGAAGGATCCACAAAAAGAGTACTTCCTTA
TCACTGTTTCATGGAATTTCAGGTCAATGGCATCGACTTCTACATCAATGGGCACGACCACTGC
CTGGAACACATTAGCAGCAGAGACAGGTTAACATCATTTGACACAAAGTTTCCGCTTTTATGTC
ACAGTAATATAGAACAAAACATGTTTGCATAATCGATGAAACTTGTCTAACCTGAATGCATGCA
CTCCTATTGTTACAGTCCTATCCAATACTTCACAAGTGGAGGTGGTTCAAAAGCATGGAGAGGA
GTCTTGCAGCCAAATTCTGATAAGCTCCAGTTCTTTTACGATGGACAAGGGTTCATGTCCCTCC
AGATAAACCAGGACCAAGCTGACTTCATATTTTATGATGTTTCTGGGAACATCTTGTACAAGTG
GAGCAAGAGCAAAGCAAACTACCTCCAGCCCTCCACCTATATCACTGAAGCATGAGGCAGATGC
AAAACCACAAAACGGAGAATTAGCTTGGCTAAGATATTTGTATCAAATTTGAATGCATTATTGT
GGCACGCAAGGGAAGAGGACCGGAAAGGAAATAGGAAAGTATTTAAGCATGGCATGTGATTGAT
CTACTAAAGAAATTTGAGACAAGGCCGAGACCATCCTACTAGACTAGGAAAAGAGATGTTCAGT
ATGGTATCCATTAGATCTGATTCATACAACTTCTTGCCAGAGGACCATCGATTATGCCATGTAT
AATTTACAAAGAAGGCTTAAAACTCTAAAAGCTAGTAGTGACCTTTGCATATCGGCATCAGGGT
TCTTCAGTATTGCCAAGCATTCACATATAACCTTTGGAGAGAGAGAGAGAGAGAGAGAGACTTT
GGGGGTTTCTAAGCTGGTATTTTCATTTAAAAGAGACAATGAAAAGAAAATTTGATCTATGATA
ATCAAGCATGTGTCGGTGAAGACGGCTATTAGTTACTGCTTCTGGAAAAAGGTTGTAATTCAGT
ACAGAGTTGTGTACGTGTCCATTTGAATAAAAATTGCATATAACAGAATAAAATTATAATGAAA
ATTCTGGCAAGCAAGTTATGAAAGGTAAAATGAGGCTTTAACATGCCATATAAAAGCTCTCCAA
AATGCAAAGCTAGATAAATCCAACATTCTTGACACATCGTTCTTTTCAAAGAAAAAAAACACTA
TAATTTGAAACTAATTCTAGGTAACATCATCGCGACGTTATTACTATTAATGTATTGAAATTAT
CAGGTCAACATTTAGTTCCCTTCAGTGCATACCTGGGGAGAACAGGAACTGACAATAAAAATGG
CCTCACTGGACAGCCAATATGGCAAAAATGTCAACAGCTTTCTCTGCAATTCTTCTGAATAATT
CTCCCACATAGATACGGCTAATTCAAAATCACTCCATTCAAAATCAATCTCTACATTCTTATGT
GATCCAAATATGGTTTGTTCAAGGCCATGGTTGCATGGCAATGGTAGTTTTGTTCCTCTGGATT
GACTAACAGGACAGCAGACTGTTCCTGAACCACCAGAAGTTTGTTTCCTCTTTGCTGACAGCTC
AGGTGCTTTCCAGTAGTAAAACTGCACCACCTGTTTCAGAGATTTGCAAATCATAGAACACTGA
CACGCTTAACAGAACAGGATATAACACATTTGAATGCCATGTTTGGAAAGCAGGAATATCATAG
GAAACAGTTCCTTTTGTAAAGGAATTAGAAAAAAAAAGCATATTCTAATGGGGCATAAATAATT
TTTTATTTGTATTTTCTAAAAGATGTCAACTTATTTGAGGAATGTCATTCTCTAATACAACCAC
AGAATTTTCTGTTGTTATAGCATTCTCATGAAGATTTAGACTATAACATTGAAATAAAGGCATC
TTACACGTGCAGTAAAGGATAATAAAGTTTGACTATTGTAATCTAATGGACATGATCTGCAGAC
TAAAACTACTTAAAAAGTGAAAGTATGTAGATACCTGAAGAGCATGCAAGCCATTGGCAAAAAC
TTTGTCAAAGACATCATCTCCCCTACCAAGTCGTACTGGCTTCCCAAGCAACTCTATAGGGTCA
TCTTCAGCAGGTGCAACAGATTTATTGTCTTCATCAATGCTTGAGTGGAAAGAGAACCCAAGAA
TGTGCACTCTAGCACATCGTACGTCAAAACCAGAATGGTCATAGGCAAACCAATACATTATATC
AGAGGCTGGCAAAGGAATATAAGAACTCTGATGAACTGGTTCATAGTTCAGTGATGTCTGAGAA
AGAAAGGAAAGGAGCTTTGGGTCCTCGTCATAAGCACTGTCTCTGGTGAACCAAAGAGTTAGGG
TGAGTCTTTCACCTTCAGTCACCTGCAAAAATAGCTGCACTTTATTAATAAACAAGAAAGGGCA
CGCATCAACCTCAGAAGAAAAATAAAATCCCTTGACAAGATAATACTTTGGCCACATATGAATT
GATTGTTTACAAAAAACAAGGTGCAAGGGAAAAGGATAGACATAAATTAGGACTAAATCATTGA
TAACAAAATGTAGCCTCAATTACCTGTTGCAACTTAGAGCACACTCAAACAAATAATTTTATTT
GATTCATCAAAACAACAATAATAGTAACAGATATACTAACATCTTGCTGATTATCCAAGTGAAA
ACAGAAAATGTGACAAACAATGCCAATGAAAAGAATAGGCATGAACCCAGTACAGAAACAATCA
ACTGGCCCATGCAGGAAACAGAAATGTACCTCATCTACACAATGGGTATTACTATTATCTGCAG
TGTAGATGACAACATCCTGAAAACAACAGTACTTCTCAGAAATTCCAAGAATATATATTCATTT
AATTATTAAAAAAAATGCATGCATGCAAACTGTAAATCAAAATGCATTAGCTTACACCAGCAAC
TGGAGTAATAAAGGAAGGTTCACCATCCTGAAACTGCAAAATTCCACCTTTATAGTCCTTCCCA
TGATCGTTTAAGTAGCACACTGCCTTTTGATTGAAAGATGGAAATGGTGCATTCCATGCCATAT
TTTAATTCAGAAGGAAAAAGGGTCAGAACAAGAACTGAGAAGAGTGTTAGTCAAAAAAAAGAAC
TGAGAACAGTACATTTGAGTAAAAAGGGCCGCATTGAAATATAAACAACTACAACAACTGAGAA
AATGGAAGAGTATATTTTGGACAGGACCTAGATAGTCCCACAAACAGAGATAAATTACTCATAC
AAAATAAGATTAACTAGATAATCATACAAAAAAAATGCAATTCACAATATCAGAAGCACCGAAA
TGAATGCTTGCATGAAATACAGTTTGTTGGAACAGACAAAACAATATGTAGACATGAAAACAAC
TATAAAAGTTGACTAAATACCCAAAGATAGATTGACCCTCACCGTGAAGGCTCTTTGCCTAAGA
TAAGGTTTGTTGTCATCACTGTGCCACCCAATAGAAGCTCCCTTGCACCAA
Conservation Information
Conserved circRNAs osi_circ_004662* osi_circ_014110
PMCS 0.32049906
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015