Detail information of Os03g0238700_circ_g.3


General Information
CircRNA Name Os03g0238700_circ_g.3
ID in PlantcircBase osa_circ_018778
Alias Os_ciR9148
Organism Oryza sativa
Position chr3: 7326385-7327873  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0238700
Parent gene annotation Similar to Acid phosphatase type 5. (Os03t0238700-01)
Parent gene strand -
Alternative splicing Os03g0238700_circ_g.1 Os03g0238700_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0238700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATACCCAAAGATAGATTGACCCTCACCGTGAAGGCTCTTTGCCTAAGATAAGGTTTGTTGTCA
TCACTGTGCCACCCAATAGAAGCTCCCTTGCACCAActgaagagcatgcaagccattggcaaaa
actttgtcaaagacatcatctcccctaccaagtcgtactggcttcccaagcaactctatagggt
catcttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGAGCATGCAAGCCATTGGCAAAAACTTTGTCAAAGACATCATCTCCCCTACCAAGTCGT
ACTGGCTTCCCAAGCAACTCTATAGGGTCATCTTCAGCAGGTGCAACAGATTTATTGTCTTCAT
CAATGCTTGAGTGGAAAGAGAACCCAAGAATGTGCACTCTAGCACATCGTACGTCAAAACCAGA
ATGGTCATAGGCAAACCAATACATTATATCAGAGGCTGGCAAAGGAATATAAGAACTCTGATGA
ACTGGTTCATAGTTCAGTGATGTCTGAGAAAGAAAGGAAAGGAGCTTTGGGTCCTCGTCATAAG
CACTGTCTCTGGTGAACCAAAGAGTTAGGGTGAGTCTTTCACCTTCAGTCACCTGCAAAAATAG
CTGCACTTTATTAATAAACAAGAAAGGGCACGCATCAACCTCAGAAGAAAAATAAAATCCCTTG
ACAAGATAATACTTTGGCCACATATGAATTGATTGTTTACAAAAAACAAGGTGCAAGGGAAAAG
GATAGACATAAATTAGGACTAAATCATTGATAACAAAATGTAGCCTCAATTACCTGTTGCAACT
TAGAGCACACTCAAACAAATAATTTTATTTGATTCATCAAAACAACAATAATAGTAACAGATAT
ACTAACATCTTGCTGATTATCCAAGTGAAAACAGAAAATGTGACAAACAATGCCAATGAAAAGA
ATAGGCATGAACCCAGTACAGAAACAATCAACTGGCCCATGCAGGAAACAGAAATGTACCTCAT
CTACACAATGGGTATTACTATTATCTGCAGTGTAGATGACAACATCCTGAAAACAACAGTACTT
CTCAGAAATTCCAAGAATATATATTCATTTAATTATTAAAAAAAATGCATGCATGCAAACTGTA
AATCAAAATGCATTAGCTTACACCAGCAACTGGAGTAATAAAGGAAGGTTCACCATCCTGAAAC
TGCAAAATTCCACCTTTATAGTCCTTCCCATGATCGTTTAAGTAGCACACTGCCTTTTGATTGA
AAGATGGAAATGGTGCATTCCATGCCATATTTTAATTCAGAAGGAAAAAGGGTCAGAACAAGAA
CTGAGAAGAGTGTTAGTCAAAAAAAAGAACTGAGAACAGTACATTTGAGTAAAAAGGGCCGCAT
TGAAATATAAACAACTACAACAACTGAGAAAATGGAAGAGTATATTTTGGACAGGACCTAGATA
GTCCCACAAACAGAGATAAATTACTCATACAAAATAAGATTAACTAGATAATCATACAAAAAAA
ATGCAATTCACAATATCAGAAGCACCGAAATGAATGCTTGCATGAAATACAGTTTGTTGGAACA
GACAAAACAATATGTAGACATGAAAACAACTATAAAAGTTGACTAAATACCCAAAGATAGATTG
ACCCTCACCGTGAAGGCTCTTTGCCTAAGATAAGGTTTGTTGTCATCACTGTGCCACCCAATAG
AAGCTCCCTTGCACCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.146924446
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015