Detail information of AT2G03530_circ_g.1


General Information
CircRNA Name AT2G03530_circ_g.1
ID in PlantcircBase ath_circ_012685
Alias 2:1072265-1072845
Organism Arabidpsis thaliana
Position chr2: 1072265-1072845  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03530
Parent gene annotation ureide permease 2
Parent gene strand +
Alternative splicing AT2G03530_circ_g.2 AT2G03530_circ_g.3 AT2G03530_circ_g.4 AT2G03530_circ_g.5 AT2G03530_circ_g.6
Support reads 1/1/1/1
Tissues seedling;root;leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03530.5:3
AT2G03530.4:3
AT2G03530.1:3
AT2G03530.2:3
AT2G03530.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAAGA
TTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAGgataattggccgtctgttatgtttgcaa
tggcgggcggtatcgtgcttagcctcgggaatctatcaactcaatatgcatgggctttagtagg
cttatcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 215
Transcript exons: 1072265-1072387,1072754-1072845
GATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTAT
CAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCCATCA
AAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAAGATTTCTTATAGAGC
TTGAGAACACAAGAGCCATAAAG

Transcript length: 432
Transcript exons: 1072265-1072403,1072474-1072639,1072719-1072845
GATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTAT
CAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCAC
TGTAGTCATAGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCCTT
TTCCCCGGTGTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGATCCAATG
CAGACGATAACAAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAAGCTTCAGGTCCATC
TACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAA
GGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAG

Genomic sequence GATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTAT
CAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCAC
TGTAGTCATAGGTTAGATCATGAAGTTATATACTTTGGTTTGAAAGTGGTTAGTTTACAATTCT
TGTTTTCTAACTTTCAGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAG
ATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGAT
CCAATGCAGACGATAACAAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAGTAATCAAG
ATTCAGTCTCTCACTTTATTTTCCTAAACAATCTGTTTTCTTACTAATATCCCAATCTTGTCTC
ATCCAGAGCTTCAGGTCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAAT
GTTACGACAAAACCTAAAGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCA
TAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.212482982
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020